Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4339g00001 GAAGGAGCATCAAAGGAAGACATTGAACAGTTGTCAAAATTCAAATTCCGAAGAGTTGAAAGCAATGAGAAACAAACTGATAATATTCAAGAATCTGCTGGAGGTATAATGACTGAATGCCGGGCTGATTCACCTATTGAACATGTTCTTGCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTTCTTATGATGATGGAGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAATGGCTGTATATTAATGCGACATGCCCCCTCTGCAAGTATAACATCTTGAAAAGTAGTAACTTCGGTCCAGAGGAAGTGTAG 339 0.41 EGASKEDIEQLSKFKFRRVESNEKQTDNIQESAGGIMTECRADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNFGPEEV 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4339g00001 112 ProSiteProfiles Zinc finger RING-type profile. 57 98 IPR001841 -
Trme4339g00001 112 Pfam Ring finger domain 56 98 IPR001841 -
Trme4339g00001 112 FunFam E3 ubiquitin-protein ligase At1g12760 43 108 - -
Trme4339g00001 112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 108 IPR013083 -
Trme4339g00001 112 PANTHER TARGET OF ERK KINASE MPK-1 2 103 - -
Trme4339g00001 112 SMART ring_2 57 97 IPR001841 -
Trme4339g00001 112 SUPERFAMILY RING/U-box 47 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4339g00001 Trme-Chr4339 1366 2165 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4339g00001 1 105 C3H Transcription Factor Family AT1G68070 53.704 1.04e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4339g00001 - - gmx:100800429 214.542