Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43373g00001 ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCTAGTATTGTAGGTCGTCCCCGTCATACGGGTGTTATGGTTGGTATGGGCCAAAAAGATGCATATGTTGGTGATGAGGCACAATCTAAACGTGGTATCCTCACTCTTAAGTACCCAATTGAGCATGGTATTGTTAGCAATTGGGATGATATGGAAAAGATTTGGCATCATACATTCTATAATGAGCTTCGTGTCGC 296 0.4459 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVA 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43373g00001 99 Pfam Actin 5 98 IPR004000 -
Trme43373g00001 99 PANTHER ACTIN 9 99 IPR004000 -
Trme43373g00001 99 FunFam Actin, alpha skeletal muscle 3 99 - -
Trme43373g00001 99 PRINTS Actin signature 28 37 IPR004000 -
Trme43373g00001 99 PRINTS Actin signature 51 62 IPR004000 -
Trme43373g00001 99 PRINTS Actin signature 63 85 IPR004000 -
Trme43373g00001 99 SUPERFAMILY Actin-like ATPase domain 5 98 IPR043129 -
Trme43373g00001 99 Gene3D Actin; Chain A, domain 2 36 73 - -
Trme43373g00001 99 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Trme43373g00001 99 Gene3D - 4 99 - -
Trme43373g00001 99 FunFam Actin, alpha skeletal muscle 36 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43373g00001 Trme-Chr43373 599 1016 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43373g00001 1 99 Cytoskeleton Gene Families AT5G09810 98.990 4.97e-70 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43373g00001 K10355 - psom:113310417 210.305