Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4331g00001 ATGTTAGATTTTTCATTCTCGGAAGATTTTTCAAATGACTATTTCCACAATGATGTGAAAATGGTAGATGATGTGATCATTGATGCTAATAATGTTGACATGCCAATCTCTTGTTCTGAAGAAACTAGCGATGAAAGCACTTTGCCTGAAAATTCTATCAATGACGATGATGTTGGACAACAATTTGTTTTAGAAGATGAGCATAAAGATATGACTCATGCAACAGGAGCAAAAACCTCAGAGGATGGTTACAATTGGAGAAAGTATGGGCAAAAACAGGTCAAAGGTAGTGAATATCCAAGAAGCTACTATAAATGTACCCAAACTAATTGTCAGGTCAAGAAAAAGGTGGAAAGATCGCACGACGGCCAAATAACAGAAATTATTTACAGGGGTAATCATAACCATGAAAAACCACACTCTAGTCGTCGAGGATCAACACCTTCAAATGATGAGATGTTAGATATTGTTGAAGCCAATGATACATGTGATAGAGCTGATGTTGATTCGGTAGGGCGAAATATTAAGTCGCGAGGAAAAGATGCAAAACACAATTTGGAGGGGAAGCTTGATTGTCAAGAAAGGAAATCTCTGTCTTCTATTGCGACCGATATTTCAGATCGTATAAAGAGATTTAGATCTCTTGGTATGTCGGAATCAGATGATGCTCCAGAGCATTCTTCCGCACATACTAATCATGATGGTGATAAAGATGGAGCCACTCAAGAAGTTTTACCACTTCGAGGTGATGCTGAAGAAGATGAATCAGAATCAAAAAGAAGGAAGAACGAGAGCTATCCAGTTGAAACAATGGTACCATCGAGAGCTATTCGTGAGCCACGAGTGGTAGTGCAAGTTGAGAGTGAAGTAGACATACTCGACGATGGTTACCGCTGGCGAAAGTATGGACAAAAGGTTGTCAAAGGGAATCCAAACCCCAGGAGTTACTACAAATGCACAACTGTTGGATGTACTGTAAGGAAACATGTGGAAAGAGCTTCACACAATCTAAAATATATCATTACTACTTATGAGGGGAAACATAATCATGATGTTGCCACAGCAAGAAATAACATTCATATAAGCTCAAATGATGTTGCTTTGCCTTCTAGTGGTGCTAATGTGCATGCCTCTGGTATCCCCAAGTCCGAAACTCCTCAAACTCTTGCAACTCATTTTGATAGAAAACTTGATTTTAGCAATGGGTTTCTTAGATCAAGTTTAATGGGAAGTTTTAGTAATGATATGAAGTTTGGACCTTCTTCCATATCCCAAATGAAGTA 1283 0.3858 MLDFSFSEDFSNDYFHNDVKMVDDVIIDANNVDMPISCSEETSDESTLPENSINDDDVGQQFVLEDEHKDMTHATGAKTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQTNCQVKKKVERSHDGQITEIIYRGNHNHEKPHSSRRGSTPSNDEMLDIVEANDTCDRADVDSVGRNIKSRGKDAKHNLEGKLDCQERKSLSSIATDISDRIKRFRSLGMSESDDAPEHSSAHTNHDGDKDGATQEVLPLRGDAEEDESESKRRKNESYPVETMVPSRAIREPRVVVQVESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCTVRKHVERASHNLKYIITTYEGKHNHDVATARNNIHISSNDVALPSSGANVHASGIPKSETPQTLATHFDRKLDFSNGFLRSSLMGSFSNDMKFGPSSISQMK 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4331g00001 427 Gene3D WRKY domain 67 140 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme4331g00001 427 MobiDBLite consensus disorder prediction 218 266 - -
Trme4331g00001 427 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 49 376 IPR044810 GO:0003700
Trme4331g00001 427 Pfam WRKY DNA -binding domain 81 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme4331g00001 427 Pfam WRKY DNA -binding domain 294 351 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme4331g00001 427 MobiDBLite consensus disorder prediction 218 272 - -
Trme4331g00001 427 SMART WRKY_cls 293 352 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme4331g00001 427 SMART WRKY_cls 80 138 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme4331g00001 427 MobiDBLite consensus disorder prediction 132 151 - -
Trme4331g00001 427 SUPERFAMILY WRKY DNA-binding domain 286 352 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme4331g00001 427 Gene3D WRKY domain 280 346 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme4331g00001 427 ProSiteProfiles WRKY domain profile. 288 353 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme4331g00001 427 ProSiteProfiles WRKY domain profile. 75 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme4331g00001 427 FunFam WRKY transcription factor 68 140 - -
Trme4331g00001 427 FunFam WRKY transcription factor 57 279 353 - -
Trme4331g00001 427 SUPERFAMILY WRKY DNA-binding domain 76 139 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4331g00001 Trme-Chr4331 403 2241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4331g00001 76 356 WRKY Transcription Factor Family AT5G56270 53.425 2.64e-85 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme4331g00001 WRKY 1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4331g00001 K18835 - gmx:100813723 516.538