Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4328g00001 AAAGTTTGGGATGCATTAACGGGCGACGAGTTACATTCTTTTGAGCATAAGCACATTGTTAGAGCATGTGCTTTTTCTGAGGATACTCACCTTTTGCTCACTGGGGGAGCAGAGAAAATTCTCCGAATTTATGATTTGAATCGGCCCGATGCACCACCCAAAGAAGTGGATAAATCCCCCGGTTCAGTCAGGAGTGTTGCATGGCTTCATAGTGACCAGACAATATTGAGTTCATGTACTGATATGGGAGGCGTCAGGCTATGGGATGTAAGAACTGGTAACATAGTTCAGACACTTGACACCAAGTCGCCTATGACTAGTGCTGAAGTAAGTCAGGATGGTCGTTATATTACAACTGCCGATGGTTCTACTGTTAAGTTTTGGGATGCAAATCACTATGGATTGGTGAAGAGCTATGATATGCCGTGCAATGTGGAATCAGCTTCATTGGAGCCCAAGTTTGGGAACAAGTTTGTTGCTGGGGGAGAAGACTTGTGGGTTCATGTGTTTGATTTCCATACTGGCAATGAGATTGGTAAGTTACGTAACATTTAA 555 0.436 KVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGAEKILRIYDLNRPDAPPKEVDKSPGSVRSVAWLHSDQTILSSCTDMGGVRLWDVRTGNIVQTLDTKSPMTSAEVSQDGRYITTADGSTVKFWDANHYGLVKSYDMPCNVESASLEPKFGNKFVAGGEDLWVHVFDFHTGNEIGKLRNI 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4328g00001 184 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 47 IPR001680 GO:0005515
Trme4328g00001 184 Pfam WD domain, G-beta repeat 96 129 IPR001680 GO:0005515
Trme4328g00001 184 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Trme4328g00001 184 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 182 - -
Trme4328g00001 184 SMART WD40_4 132 171 IPR001680 GO:0005515
Trme4328g00001 184 SMART WD40_4 92 129 IPR001680 GO:0005515
Trme4328g00001 184 SMART WD40_4 49 89 IPR001680 GO:0005515
Trme4328g00001 184 SMART WD40_4 7 45 IPR001680 GO:0005515
Trme4328g00001 184 Gene3D - 1 183 IPR015943 GO:0005515
Trme4328g00001 184 SUPERFAMILY WD40 repeat-like 1 182 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4328g00001 1 164 Eukaryotic Initiation Factors Gene Family AT2G46290 25.926 3.07e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4328g00001 K13137 - gmx:100782712 349.362