Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme43276g00001 | ATGGTTCTCTCAAAGACATCCTCCGAATCCGATGTTTCTGTTCATTCAACCTTTGCTTCTCGCTATGTTAGAACTTCACTTCCTAGATTCAAGATGCCGGAGGAGTCGATACCAAAGGAGGCAGCATACCAAATAATAAACGATGAATTGATGTTGGATGGAAATCCTAGATTGAATCTAGCATCTTTTGTAACAACTTGGATGGAGCCTGAGTGTGATAAGCTTATTATGGCTTCCATCAACAAGAACTATGTTGACATGGATGAATACCCTGTTACCACTGAACTTCAG | 291 | 0.4055 | MVLSKTSSESDVSVHSTFASRYVRTSLPRFKMPEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQ | 97 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme43276g00001 | 97 | Gene3D | - | 1 | 65 | - | - | |
| Trme43276g00001 | 97 | PANTHER | GLUTAMATE DECARBOXYLASE | 1 | 97 | IPR010107 | GO:0004351|GO:0006536|GO:0030170 | |
| Trme43276g00001 | 97 | FunFam | Glutamate decarboxylase | 1 | 65 | - | - | |
| Trme43276g00001 | 97 | SUPERFAMILY | PLP-dependent transferases | 15 | 97 | IPR015424 | - | |
| Trme43276g00001 | 97 | Pfam | Pyridoxal-dependent decarboxylase conserved domain | 33 | 97 | IPR002129 | GO:0016830|GO:0019752|GO:0030170 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme43276g00001 | Trme-Chr43276 | 22 | 512 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme43276g00001 | 1 | 97 | Calmodulin-binding Proteins | AT5G17330 | 94.845 | 1.20e-61 | 193 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme43276g00001 | K01580 | - | gmx:100796533 | 193.741 |