Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43271g00001 ATGGCTCCAAAATCTTCCACTGCTTCACATCCTACTTACGAAGAGATGATTAAGGAAGCANTTGTGACACTGAAGGAGAAAACAGGTTCAAGTCAATTTGCGATTGCGAAATTCATCGAAGAGAAACACAAAAATCTTTCTCCAAATTTCAAGAAGCTATTGCTTCAAGCTTTGAAGAAGAACGTTGCTTCTGGAAAGCTTGTTAAGGTTAAAGGCTCATTCAAACTTTCTCCGGCGACTAAAGCTTCTGAGCCGAAGACAAAGCCCGCCGTTGCAAAGCCTAAAACAAAGCCAGCTGCTAAAGTGACGGCGGTGAAGGCCAAGCCAGCCGCTAAGCCAAAGACGAAAGCTGTTGTCAAGCCAAAGGCTGTTTCAAAGGCCAAACCTGTTACTGCCAAGCCCAAGCCTGCTGCTGCCAAGCCCAAAGCTGCTGCTGCNNNNNNNAAAGCTGCTGTTGCTAAGCCCAAAGCTGCTGCTGCAAAGCCCAAGGCAAAGGCAGGTGTGAAACCGAAGGCTACTGAGAAACCTGCCAAGGCTGCAAGGACTTCAACGAGGACAACGCCGGGGAAGAAAGTTGCTGCTTCAAAGGCAGTGGTGAAGAAAGTTGTGGCTGCTAAGAAAGCTCCGGTGAAGAGTAAAAGTGTGAAGTCTCCGGTGAAGAAAGTTTCGACAAAGAGAGGAGGAAGAAAGTGA 693 0.4719 MAPKSSTASHPTYEEMIKEAXVTLKEKTGSSQFAIAKFIEEKHKNLSPNFKKLLLQALKKNVASGKLVKVKGSFKLSPATKASEPKTKPAVAKPKTKPAAKVTAVKAKPAAKPKTKAVVKPKAVSKAKPVTAKPKPAAAKPKAAAAXXKAAVAKPKAAAAKPKAKAGVKPKATEKPAKAARTSTRTTPGKKVAASKAVVKKVVAAKKAPVKSKSVKSPVKKVSTKRGGRK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43271g00001 230 PRINTS Histone H5 signature 152 171 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trme43271g00001 230 PRINTS Histone H5 signature 23 40 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trme43271g00001 230 PRINTS Histone H5 signature 102 116 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trme43271g00001 230 SUPERFAMILY "Winged helix" DNA-binding domain 6 88 IPR036390 -
Trme43271g00001 230 MobiDBLite consensus disorder prediction 156 230 - -
Trme43271g00001 230 PANTHER HISTONE H1 4 207 - -
Trme43271g00001 230 SMART h15plus2 7 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trme43271g00001 230 MobiDBLite consensus disorder prediction 74 143 - -
Trme43271g00001 230 CDD H15 7 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trme43271g00001 230 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 9 78 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trme43271g00001 230 Gene3D - 4 84 IPR036388 -
Trme43271g00001 230 Pfam linker histone H1 and H5 family 10 77 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43271g00001 Trme-Chr43271 170 980 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43271g00001 1 76 Single Myb Histone (SMH) Gene Family AT1G72740 32.895 1.55e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43271g00001 K11275 - zju:107425932 124.02