Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4325g00001 ATGAATGTTGATGGTAGGAAATGGATTGGTGATATGGTACCTAATAACAATGTTACCTTGAATTCTTCTGGTGTTGTTGCTTCCACTGATGCATTAAGTGGAAATTCAATCTATGAGCCACTTTATAGAACAGCTAGAATTTTCACAGGTTCTATGAATTACACAATCAAAGGTGTTCATGGAAACTATTTTTTTAGGTTCCATTTATGTCCTTTTGAGATTGTGGACCATAATGTGAATGAGTCTTCTTTTGGTGTTGTTGTTAATGGTATGAAACTTTTGTCGGAGTTTAGCGTTCCGGGTAAGATATCTGAAAAGAATGTGAACTTGCTTAATGCTGGAAAGAATTCAAGTTCATTCTTTTTGATTAAAGAGTATATTCTTGATGTTAATGATGATAAGCTTGTGATTGAGTTTATTCCGAGTAGAAACTCGTTTGGCTTTATCAATGCTATTGAGATTGTTCCGGTTGTTGGCGAGCTTTTTGATGGCTCGGTTAGTAAAGTTGGTGGTGGAAGCTTGAATTTGACTGGTCGTGCGATGGAGACTATGTATAGGTTAAATGTTGGTGGTCCTGAGATTCAATCCAATCAGGATCCGGATCTTCGGAGACTTTGGGAAGTTGATTCTAGCTACATGATCACGGAAAACGCCGGTGAAATGATTAAGAGCAGCTCAAATATTACATATGCTTCTGTGAATGATACTTCGGTGGCTCCTCTCATTGTGTATGAAACTGCAAGGGCAATGTCCAACACTGAAGTCTTGGACAAAAGATTTAACATGTCATGGAAATTTGAAGTAGATCCCGATTTCGATTACATGGTTCGGTTGCATTTCTGTGAGTTGACGTACGATAAGTCGAACGAGAGAGTATTCAGGATCTACATAAACAACAGGACAGCTGCAGATAATCTCGATGTTTTTGTTCGAGCAGGAGGGAAGAATAAAGCGTATCACCAGGATCATTATGATCCTGTGTCGTTGAAGATTGACACACTTTGGGTTCAACTAGGTCCTGATACTTCTGCTGTTGCTGCGGGAACCGATGCTCTCTTGAATGGTCTAGAGRTTTTTAAGCTTAGTCGAAACGGGAATCTTGCCTACGTGGAAAAATTCGACTTGGCTGGGAATTCGGGAAGCAAATCAAACTCAAAAGTTCTTTGGGTTGGTGTAGGAGCAGGTGTAGCTTCTGTAGCTATAATTGCATGTATTGGTGTCTTTGTTTTCTGTTTCTGTAAAAGAAGGAGAATCGAGTCAAGTGATGCCAAAAACAATTCTCCNGGTTGGCGACCGATATTCCTTTATGGCGGGGCTGCTGTAAACAGCTCTGTAGGTGGCAAAGGATCAGCAGGAAATCAAAAGTTATATGGATCCGTGGCTTCAACCGGAGCTGGTAAGCGGTTTACGTTGGCTGAAATCAATGCTGCAACGAATAATTTCGATGAGAGTTTGGTCATTGGAGTTGGAGGCTTTGGTAAGGTGTATAAAGGAGAGGTTGATGATGGCGTGCCCGCTGCAATTAAGCGCGCCAATCCGCATTCTGAACAAGGTCTGGCTGAATTCGAGACCGAAATCGAGATGCTCTCAAAACTAAGACACAGGCATTTGGTGTCTTTGATTGGTTTCTGTGAAGAGAAAAGTGAAATGATTTTGGTTTATGAATACATGGCAAATGGAACTCTAAGAAGTCATCTATTTGGTAGCGATCTCCCTCCACTAACTTGGAAGCAACGTCTCGAAGCCTGCATCGGTGCTGCAAGGGGACTTCACTACCTTCACACAGGAGCCGACCGTGGAATAATTCACCGAGATGTCAAAACAACCAATATACTGTTAGACGAGAATTTTGTAGCGAAAATGGCTGATTTCGGTTTGTCAAAAGACGGTCCTGCTTTTGAACATACTCATGTTAGCACTGCTGTGAAAGGAAGTTTCGGCTATCTCGATCCAGAGTATTTCAGAAGACAACAGTTAACCGAGAAATCAGACGTTTACTCTTTTGGAGTTGTTCTATTCGAAGCTGTTTGTGCTAGAGCTGTGATAAACCCTACCTTGCCTAAAGATCAGATCAATCTTGCAGAATGGGCAATGAGATGGCAAAGAGAAAG 2111 0.414 MNVDGRKWIGDMVPNNNVTLNSSGVVASTDALSGNSIYEPLYRTARIFTGSMNYTIKGVHGNYFFRFHLCPFEIVDHNVNESSFGVVVNGMKLLSEFSVPGKISEKNVNLLNAGKNSSSFFLIKEYILDVNDDKLVIEFIPSRNSFGFINAIEIVPVVGELFDGSVSKVGGGSLNLTGRAMETMYRLNVGGPEIQSNQDPDLRRLWEVDSSYMITENAGEMIKSSSNITYASVNDTSVAPLIVYETARAMSNTEVLDKRFNMSWKFEVDPDFDYMVRLHFCELTYDKSNERVFRIYINNRTAADNLDVFVRAGGKNKAYHQDHYDPVSLKIDTLWVQLGPDTSAVAAGTDALLNGLEXFKLSRNGNLAYVEKFDLAGNSGSKSNSKVLWVGVGAGVASVAIIACIGVFVFCFCKRRRIESSDAKNNSPGWRPIFLYGGAAVNSSVGGKGSAGNQKLYGSVASTGAGKRFTLAEINAATNNFDESLVIGVGGFGKVYKGEVDDGVPAAIKRANPHSEQGLAEFETEIEMLSKLRHRHLVSLIGFCEEKSEMILVYEYMANGTLRSHLFGSDLPPLTWKQRLEACIGAARGLHYLHTGADRGIIHRDVKTTNILLDENFVAKMADFGLSKDGPAFEHTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEAVCARAVINPTLPKDQINLAEWAMRWQRE 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4325g00001 703 FunFam receptor-like protein kinase FERONIA 447 556 - -
Trme4325g00001 703 ProSitePatterns Protein kinases ATP-binding region signature. 487 509 IPR017441 GO:0005524
Trme4325g00001 703 SMART serkin_6 481 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4325g00001 703 Pfam Protein tyrosine and serine/threonine kinase 486 678 IPR001245 GO:0004672|GO:0006468
Trme4325g00001 703 SUPERFAMILY Protein kinase-like (PK-like) 460 692 IPR011009 -
Trme4325g00001 703 Gene3D - 1 157 - -
Trme4325g00001 703 Gene3D - 179 363 - -
Trme4325g00001 703 Gene3D Transferase(Phosphotransferase) domain 1 557 703 - -
Trme4325g00001 703 Pfam Malectin-like domain 114 360 IPR024788 -
Trme4325g00001 703 FunFam Receptor-like protein kinase FERONIA 180 363 - -
Trme4325g00001 703 Gene3D Phosphorylase Kinase; domain 1 448 556 - -
Trme4325g00001 703 ProSiteProfiles Protein kinase domain profile. 481 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4325g00001 703 PANTHER OS07G0166700 PROTEIN 467 702 IPR045272 GO:0004714|GO:0006468
Trme4325g00001 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 601 613 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4325g00001 Trme-Chr4325 44 2154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4325g00001 3 703 Receptor kinase-like Gene Family AT1G30570 64.823 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trme4325g00001 Malectin_like 1.2e-27 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4325g00001 - - gmx:100791403 1184.47