Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43229g00001 AACCGAGGACCAGGACGAACCCCACTTGATTGGACCACAAGGCTAAAGATAGCATCTGGAGCAGCACAAGGTGTGGCCTTCATTCACAACTACAACAATAATCTCATCCACGGTAACATCAAATCCACCAACATCCTAATCGACGTCTCTGGAAACACACACGTGGCAGATTTTGGACTCTCCATTTTCACCACCCCATCAAACAGAAGATCAAACGGTTACCGTGCTCCAGAGTCATCAGACGGTCGAAAACAGTCTCAAAAGTCCGACGTGTATGCTTTTGGTGTTCTGTTAATGGAGATATTAACAGGGAAATGTCCCTCCGCCGTAGACGGCGGAACTGAGGTGGAGCTTCCTAAGTGGGTTCAGTCGGTGGTTAGAGAGGAATGGACGTCGGAGGTTTTTGATCTTGAGCTGATGAGGTATAAGGATGCTGAGGAGGATATGGTGGCATTGTTGCAGATTGCGTTGACGTGTACTGCGATTGTACCTGATCAACGGCCTAAGATGAGCCACGTGGTTAAGAGGATTGAGGAGTTGCGTGAT 546 0.4835 NRGPGRTPLDWTTRLKIASGAAQGVAFIHNYNNNLIHGNIKSTNILIDVSGNTHVADFGLSIFTTPSNRRSNGYRAPESSDGRKQSQKSDVYAFGVLLMEILTGKCPSAVDGGTEVELPKWVQSVVREEWTSEVFDLELMRYKDAEEDMVALLQIALTCTAIVPDQRPKMSHVVKRIEELRD 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43229g00001 182 Gene3D Transferase(Phosphotransferase) domain 1 3 182 - -
Trme43229g00001 182 Pfam Protein tyrosine and serine/threonine kinase 8 176 IPR001245 GO:0004672|GO:0006468
Trme43229g00001 182 ProSiteProfiles Protein kinase domain profile. 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme43229g00001 182 SUPERFAMILY Protein kinase-like (PK-like) 7 177 IPR011009 -
Trme43229g00001 182 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 181 IPR046959 -
Trme43229g00001 182 SMART tyrkin_6 1 177 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43229g00001 Trme-Chr43229 472 1017 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43229g00001 1 181 Receptor kinase-like Gene Family AT1G68400 70.213 1.47e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme43229g00001 PK_Tyr_Ser-Thr 3.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43229g00001 - - gmx:100811051 282.722