Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43204g00001 ATGCCTGATGAGAGTGTCAGCACTCAGAATCATAGGGATAGGCTTCTGAGGTTGGTTAAGAGCCTATCACCAAAAGTCGTGACACTTGTCGAGCAAGAATCTAACACAAACACTGCGGCATTCTTTCCGCGTTTCCTTGAAACTATGGACTATTACACGGCAATGTTTGAGTCAATAGACGTGACTCTTCCGAGAGAGCATAAAGAGAGAATCAATGTTGAGCAGCATTGCTTGGCAAGAGACTTAGTTAACATCATAGCTTGTGAAGGGGTCGAGAGAGTGGAACGACACGAACTGCTAGGGAAATGGAGATCAAGATTTGCAATGGCTGGTTTCACTCCTTACCCTTTGAGTTCATTGGTGAATGGTACCATAAAGAAATTGCTCGAGAATTACAGTGATAGATATAGACTTCAAGAGAAAGATGGAGCTTTATACCTTGGTTGGATGAATAGAGATTTGGTTGCTTCTTGTGCTTGGAAATGA 486 0.4259 MPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETMDYYTAMFESIDVTLPREHKERINVEQHCLARDLVNIIACEGVERVERHELLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSDRYRLQEKDGALYLGWMNRDLVASCAWK 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43204g00001 161 ProSiteProfiles GRAS family profile. 1 161 IPR005202 -
Trme43204g00001 161 Pfam GRAS domain family 2 161 IPR005202 -
Trme43204g00001 161 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 13 156 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43204g00001 Trme-Chr43204 532 1017 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43204g00001 1 161 GRAS Transcription Factor Family AT5G48150 88.199 2.16e-106 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme43204g00001 GRAS 4.6e-59 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43204g00001 - - gmx:100808300 321.242