Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43202g00001 ATGAGTGGGATTGATAGTGATAGCAATGAAGATAAGTTAAGCTCCTTTGTCAAGCAAGGAAGTAAATCAATGAAAACAAAATTGACTGAAAATGCTGTTACTGGTGGTAGCTCTAAAAGCCAGAATGCTACAGCTGAAAAATCATTCTCTGAAAGTGATCCGCAGCTCCTACTTGGAAGGAAAAGTAGAAAACATGGACGGTGCACTTTATTAGTTCGTAGTTCTAACAAGGGATTGAATTCAGAACCTGATGACTTTGTTCCATATACGGGCAAACGAACAGTGCTTTCCTGGTTGGTTGACTCAGGGGTAGTACAAGTTAGTCAAAAGGTTCAATATCGCAGGAGGAAGCGAGTAATGCTGGAGGGATGGATCACAAGAGAAGGCATTCACTGCGGTTGCTGTAGTAAGATCCTCACGGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCGCAGCCATATCAAAACATATATTTAGATTCTGGAGTTTCCCTTCTACAATGCCAAATAGATGCGTGGGAAAAACAAGAGAATTTTGGGAAAATCAGTTTCCATTCAGTAGATGTCGATGGTAATGATCCAAATGATGATACCTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGCTGTGATGGATGTCCATCAACATTTCATCAGAGTTGCCTGGATATACAG 684 0.4094 MSGIDSDSNEDKLSSFVKQGSKSMKTKLTENAVTGGSSKSQNATAEKSFSESDPQLLLGRKSRKHGRCTLLVRSSNKGLNSEPDDFVPYTGKRTVLSWLVDSGVVQVSQKVQYRRRKRVMLEGWITREGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLDSGVSLLQCQIDAWEKQENFGKISFHSVDVDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43202g00001 228 Pfam Tify domain binding domain 123 173 IPR032308 -
Trme43202g00001 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 228 IPR013083 -
Trme43202g00001 228 MobiDBLite consensus disorder prediction 1 55 - -
Trme43202g00001 228 SUPERFAMILY FYVE/PHD zinc finger 185 227 IPR011011 -
Trme43202g00001 228 MobiDBLite consensus disorder prediction 1 51 - -
Trme43202g00001 228 PANTHER PHD FINGER FAMILY PROTEIN 62 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43202g00001 Trme-Chr43202 280 963 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43202g00001 9 228 PHD Transcription Factor Family AT4G14920 61.504 4.89e-86 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43202g00001 - - mtr:25485216 408.683