Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme431g00001 ATGGATGTTCATGTGATAAATGTTGAAGAAGAAAGTGATCATCAAGCTGCAGATGACAGGGATACAGAACCTAGTGACAGTGAAATTAATAATGCTGAAAGTTCTGGATTTTATGTTGAGGAAGGGATTTCTGAGCCATATTTGGGTATGGAATTTGATTCGGAAGATGCTGCCAAGGCTTTCTACGATGACTATGCTAAACACGTGGGTTTCATCTCTAAAGTTGGCTCACGTAGTAGCTCTAAAGCCAACGGGCAAGATATGTATAGGGAGTTTGTGTGCGAAAGGGAAGGTTTGAACAAAAGGTTTAATGACGGTTGCAATGCAATGATTAAGATTGAGCTAAAGGGTCATAATAAATGGGTTGTAACCAAATTTGTGAAGGAGCATAGTCATTCATTGATGAGTTCCAGCGAGACACAAAACCTGCATCCACGTAAGCATTTTTCCAGTGTCGGAAGGACTATGCCTGAAACTTATCAAGGAATTGGACTTGTTCCAAGTGGTGTCATGTATGTATCTATGGATGGGAATCACATTTCTAATCAGAATACTTCCGCGGTGCTGAATATTCATGCTTCCACTGCCGCTGATCCAAGTCGCCCTGTTAAAAATGCCACATTGGTGAATTATACTGCTAGGCCACCTTCTCAAAACAGGACATTAGGGAAGGATGCCCATATTCTACTGGAGTATTTTAAGAAAATGCAGGGTGAGAACCCTGGTTTCTTCTATGCTATACAACTGGATGAAGACAATCATATGTCTAATGTCTTTTGGGCAGATGCCCGTTCCAGGACAGCTTACAGTCATTTTGGTGATGCAATTCATCTGGACACCACATGCAGAGTTAACCAGTACAGCGTGCCATTTGCTCCTTTTACTGGAGTAAACAATCATGGTCAGTTGGTTTTGTTTGGTTGTGCACTCCTTTTTGACGACTCCGAGGCTTCTTTTTTGTGGCTCTTTAAGACATTTCTCACAGCAATGAATGAACGACAACCTGTCTCCATAATTACTGATCAAGACATAGCCATACAGGCAGCAGTTTCACAAGTTTTCCCACAAGCTCGGCACTGTATTAACAAGTGGCATGTCTTGAGAGAAGGCCAGGAAAAGTTGGCCCATGTATGTCTAGCGCATCCAAATTTTCAGGGTGAACTTTATAACTGTATTAACCGGACAGAAACCATTGAGGAGTTTGAGTCATCTTGGAATTCTATCCTTGATAAATACGAACTTCGAAGAAATGATTGGCTTCAGTCGCTGTATAATGCCCGTGCTCAATGGGTTCCAGCGTACTTCCATGATTCATTTTTTGCTGCAATATCTCCTAATCAAGGATTTGGTGGTTCTTTTTTTGAAGGTTACGTCAACCAACAGATGACATTGCCATTATTCTTTCGGCAGTATGAAAGAGCTTTAGAAAGCTGGATTGAAAAGGAAATAGAAGCAGACTTTGAGACAATTTGCACAACACCAGTTCTGAAGACTCCTTCACCAATGGAGAAACAGGCTGCTAACCTATATACAAGAAAAGTATTTTTGAAGTTTCAGGATGAACTAGTTGAAACTTTTGTTTATACTGCAAATATAATTGAAGGAGATGATGTAAACAGTACATTCAAGGTTGCAAAATTTGAGGATGTCCACAAGGCATATACTGTTTCATTCAACCATGCAGAATTGAGAGCTAACTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTTTGCAGGCACATTTTAACTGTTTTCACTATGACAAATGTTCTTACATTACCATCTCATTACATCTTAAAAAGGTGGACAAAAAATGCAAAAGGTAGTGCTGGATCAGATGAATGTGCTGGTGAATTACATGGACAGGAGTCCCTGACATCGAGGTACAGTAATCTATGTCGGGAAGCCATCAGATATGCTGAGGAAGGGGCAGTAACTGTGGAAACTTATAATGTTGCAGTGACTGGTCTTAAAGAAGGTGGAAAGAAGGTTACTGCAATGAAAAAAAGTGTTGCCAAAGCTACACCTCCTAACAGTCAAGCCAGTGGGACTAATAATAACAAGAAAACTACCACCAGTTCAACTTTGGATTTAACTCCTCTTTTGTGGCCCCGACAAGATGAAATAACAGGGAGGTTTAATCTCAATGATTCTGGTGGTCCGGTTCAATCAGTTGCCGACCTAAATTTGCCACGAATGACCCCAGTGTCTCTTCATCGAGATGGCGGTCCATCTGGAAACATGGTGGTTCTTCCATGCCTAAAAGCAATGACATGGGTAATGGAGAACAAAAACTCAAGTCTGGGGAATAAAGTAGCTGTTATCAATCTGAAGCTGCAAGATAATAGTAGGAATCCATCAACAGAATTTGAGGTTAAGTTTCAGCTCTCAAGAGTTTCTTTGGAACCAATGCTTAAGTCTATGGCCAGCATTAGTGAACAACTCTCAAGACCAGCAAATAAGGTTGCTGTAATAAATCTCAACAATTTGGGTTGGACGCCTTACTCAACCCGTACAAAATCGGCTTGCAATGTGATGGAAGTAGTGGGTCTCACCAGTGATGCCGCCATGGCTGGGTTGTGCAGGGATGGGGGTGGTGGCTTTGGGGACGAAGGGG 2620 0.4145 MDVHVINVEEESDHQAADDRDTEPSDSEINNAESSGFYVEEGISEPYLGMEFDSEDAAKAFYDDYAKHVGFISKVGSRSSSKANGQDMYREFVCEREGLNKRFNDGCNAMIKIELKGHNKWVVTKFVKEHSHSLMSSSETQNLHPRKHFSSVGRTMPETYQGIGLVPSGVMYVSMDGNHISNQNTSAVLNIHASTAADPSRPVKNATLVNYTARPPSQNRTLGKDAHILLEYFKKMQGENPGFFYAIQLDEDNHMSNVFWADARSRTAYSHFGDAIHLDTTCRVNQYSVPFAPFTGVNNHGQLVLFGCALLFDDSEASFLWLFKTFLTAMNERQPVSIITDQDIAIQAAVSQVFPQARHCINKWHVLREGQEKLAHVCLAHPNFQGELYNCINRTETIEEFESSWNSILDKYELRRNDWLQSLYNARAQWVPAYFHDSFFAAISPNQGFGGSFFEGYVNQQMTLPLFFRQYERALESWIEKEIEADFETICTTPVLKTPSPMEKQAANLYTRKVFLKFQDELVETFVYTANIIEGDDVNSTFKVAKFEDVHKAYTVSFNHAELRANCSCQMFEYSGILCRHILTVFTMTNVLTLPSHYILKRWTKNAKGSAGSDECAGELHGQESLTSRYSNLCREAIRYAEEGAVTVETYNVAVTGLKEGGKKVTAMKKSVAKATPPNSQASGTNNNKKTTTSSTLDLTPLLWPRQDEITGRFNLNDSGGPVQSVADLNLPRMTPVSLHRDGGPSGNMVVLPCLKAMTWVMENKNSSLGNKVAVINLKLQDNSRNPSTEFEVKFQLSRVSLEPMLKSMASISEQLSRPANKVAVINLNNLGWTPYSTRTKSACNVMEVVGLTSDAAMAGLCRDGGGGFGDEG 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme431g00001 873 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 40 666 IPR031052 GO:0006355
Trme431g00001 873 MobiDBLite consensus disorder prediction 672 695 - -
Trme431g00001 873 MobiDBLite consensus disorder prediction 1 27 - -
Trme431g00001 873 Pfam MULE transposase domain 276 367 IPR018289 -
Trme431g00001 873 ProSiteProfiles Zinc finger SWIM-type profile. 554 590 IPR007527 GO:0008270
Trme431g00001 873 MobiDBLite consensus disorder prediction 673 695 - -
Trme431g00001 873 SMART 26again6 565 592 IPR006564 GO:0008270
Trme431g00001 873 Pfam FAR1 DNA-binding domain 61 135 IPR004330 -
Trme431g00001 873 Pfam SWIM zinc finger 562 589 IPR007527 GO:0008270
Trme431g00001 873 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme431g00001 Trme-Chr431 557 4061 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trme431g00001 MULE 2.9e-22 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme431g00001 - - gmx:100786516 1309.28