Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43148g00001 CCACTACCTTGGCAGCTAAGGTTCAAAATTGCAGCTGAAATTGGAACAGGCTTACTCTTCCTCCACCAAACAAAACCTGAGCCACTAGTACATAGAGACCTTAAACCGGCAAACATCTTGCTCGACCGCAACTACGTCGCAAAAATAAGTGATGTTGGTTTGGCAAGACTAGTACCTCCATCAGTAGCAGACAATGTGACGCAATATCGAATGACATCGGCTGCCGGAACATTCTGTTACATAGATCCTGAGTACCAACAGACAGGAATGTTGGGAGTGAAATCTGATATATACTCACTTGGGATAATTTTCTTGCAAATTTTGACAGCGCGACCGCCGATGGGATTGACACATCATGTTGGTAGAGCAATTGAGAAGGGAACATTTGATGAGATGTTGGATCCAAGAATAACAGATTGGCCAGCTGAAGAGGCTCTTGGATTTGCTAAGATGGCTATAAAATGTGCTGAGTTAAGGAGGAAAGATAGACCTGATCTTGGTAAAGAAGTTATGCCTGAACTTAATAGGTTAAGAGAACTTGCTGAAAGTAATGATCACCATTCTATGTTTAGTGGATTTACAAGTCCATCTACTCAGAGCCAAGTCTCTCTTCAGATGGTAAGTTTCTTTCTCTACATATTCATTCTTGCATGA 654 0.4174 PLPWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVAKISDVGLARLVPPSVADNVTQYRMTSAAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTARPPMGLTHHVGRAIEKGTFDEMLDPRITDWPAEEALGFAKMAIKCAELRRKDRPDLGKEVMPELNRLRELAESNDHHSMFSGFTSPSTQSQVSLQMVSFFLYIFILA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43148g00001 217 ProSiteProfiles Protein kinase domain profile. 1 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme43148g00001 217 Gene3D Transferase(Phosphotransferase) domain 1 1 195 - -
Trme43148g00001 217 SMART serkin_6 1 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme43148g00001 217 ProSitePatterns Serine/Threonine protein kinases active-site signature. 29 41 IPR008271 GO:0004672|GO:0006468
Trme43148g00001 217 PANTHER OS02G0152300 PROTEIN 1 190 - -
Trme43148g00001 217 SUPERFAMILY Protein kinase-like (PK-like) 1 210 IPR011009 -
Trme43148g00001 217 Pfam Protein kinase domain 9 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43148g00001 Trme-Chr43148 3 656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43148g00001 1 204 Receptor kinase-like Gene Family AT1G78940 72.330 4.49e-104 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trme43148g00001 Pkinase 1.9e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43148g00001 - - gmx:100787522 377.867