Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43135g00001 GAATTGCATGAAGCAACAGATGGGTTTAGTATTAGTAGGATTCTTGGCAAGGGATCTTCAGGTAAAGTCTACCGCGGTACATTGATTATCGATGACGCGGAAATTGGTATTGCAGTGAAGAAGCTAGAAAAGAAGATTGAGAAAAGTGAGAATGAGTTCATGACTGAGCTTAAAATTATAGGACTTACACATCACAAAAATTTGGAGAGAAACCTCAATGGAGTCAGAGTTGAAATGGCTCTTGGAATAGCAAGAGGCTTACTCTACTTGCATGAAGAGTGTGAAACACAGATCATACATTGTGATATCAAGCCACAAAATGTGTTACTTGATGCTAATCATGTTGCAAAGATTGCTGATTTTGGACTTTCCAAGCTTTTGAACAAAGATCAAACAAGAACAAATACTAATTTTAGAGGAACAATAGGGTACATAGCACCTGAATGGTTAAGGAGTTCACCTATAACTGCAAAAGTTGATGTTTTCAGCTTTGGTGTTATGCTACTTGAGATTATTTGTTGTAGGAGACATGTTGAATCATATGAGAGTCATGATGAGGATGAAAGAGGAAGTGAAGATGATGATTTGGTTCTTGTTAATTTGGTTCTAAGGTGCATAGTTTCTAAGAAATTGGAGATAGTGGTAAGTGATGACTTGGAAGTAGTCAATGATTTTAAGAGGTTTGAGCAAATGGCTTTGGTTGGATTATGGTGTCTTCATCCAAACCCAACTCTTAGACCTTCAATGAAGAAAGTGACTCAAATGCTAGAGGGAACGGTGGAAGTTGGTGTTCCACCTTTGCTTAATGATGAAACTATGGCAAATTAG 828 0.3744 ELHEATDGFSISRILGKGSSGKVYRGTLIIDDAEIGIAVKKLEKKIEKSENEFMTELKIIGLTHHKNLERNLNGVRVEMALGIARGLLYLHEECETQIIHCDIKPQNVLLDANHVAKIADFGLSKLLNKDQTRTNTNFRGTIGYIAPEWLRSSPITAKVDVFSFGVMLLEIICCRRHVESYESHDEDERGSEDDDLVLVNLVLRCIVSKKLEIVVSDDLEVVNDFKRFEQMALVGLWCLHPNPTLRPSMKKVTQMLEGTVEVGVPPLLNDETMAN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43135g00001 275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 98 110 IPR008271 GO:0004672|GO:0006468
Trme43135g00001 275 Pfam Protein kinase domain 78 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme43135g00001 275 PIRSF ILK 228 262 - -
Trme43135g00001 275 PIRSF ILK 7 76 - -
Trme43135g00001 275 PIRSF ILK 71 194 - -
Trme43135g00001 275 Coils Coil 39 59 - -
Trme43135g00001 275 SMART serkin_6 9 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme43135g00001 275 Gene3D Transferase(Phosphotransferase) domain 1 1 67 - -
Trme43135g00001 275 SUPERFAMILY Protein kinase-like (PK-like) 3 261 IPR011009 -
Trme43135g00001 275 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 60 264 - -
Trme43135g00001 275 Pfam Protein tyrosine and serine/threonine kinase 11 70 IPR001245 GO:0004672|GO:0006468
Trme43135g00001 275 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 70 - -
Trme43135g00001 275 Gene3D Transferase(Phosphotransferase) domain 1 68 262 - -
Trme43135g00001 275 ProSiteProfiles Protein kinase domain profile. 9 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme43135g00001 275 ProSitePatterns Protein kinases ATP-binding region signature. 15 41 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43135g00001 Trme-Chr43135 82 1009 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43135g00001 1 258 Receptor kinase-like Gene Family AT1G71830 38.644 7.08e-52 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme43135g00001 Pkinase 1.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43135g00001 - - lang:109330973 417.157