Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43130g00001 ATGGATACACCAAATAGATTGTCCAGTGATATTGAGAGACGGATTGGTCGCATGAAGGTTCTTATTGTTCTTGATGATGTCAAGGATACAGATCAACTAGAGATGTTATTTGGAACTCTTGATTGGTTTCGATCAGATAGTAGAATAATTGTAACAACAAGAGATAAGCAAGTACTTATTGCTAATGAAGTTGATGATATATACGAGGTTGGGATATTGAGTTCTAATAAAGCACTTGAGCTTTTTAACTTAAATGCCTTCGAACGGAATAATCAACTTGAAATGGAGGAGTACTGTGAGCTATCAAAGAGGTTTGTCAATTATGCCAGAGGCATTCCATTAGTTCTTAAAATTTTGGGTCATCTTCTTCGCGGAAAAGATAAGCAAGTTTGGGAAAGTATGCTAGACAAACTTAAAAGGGAGCCAATTAAGAAAGTTTATCATGTAATGAGACTCAGTTACGATGATCTTGATCGCCTAGAGCAAAAGATTTTTTTAGATATTGCATGTTTCTTCAATGGTTTGAATTTGAAAGTGGATTACATGAAACTTTTATTGAAAGWTTGTGAAAGTGATAATTCAGTGGCTGTTGGGTTAGAAAGGTTGACAGATAGAGCTCTTGTAACTATTTCTAAAGATAATGTTGTATCTATGCATGAGATTATACAAGAAATTGGTCGAGAGATTGTTCGCCAAGAATCTAGTAAAGACCCTGGAAGCTGCAGTAGATTATGTGATCCTGATGACATTTGTGATGTATTGCAAAATGACAAG 774 0.3501 MDTPNRLSSDIERRIGRMKVLIVLDDVKDTDQLEMLFGTLDWFRSDSRIIVTTRDKQVLIANEVDDIYEVGILSSNKALELFNLNAFERNNQLEMEEYCELSKRFVNYARGIPLVLKILGHLLRGKDKQVWESMLDKLKREPIKKVYHVMRLSYDDLDRLEQKIFLDIACFFNGLNLKVDYMKLLLKXCESDNSVAVGLERLTDRALVTISKDNVVSMHEIIQEIGREIVRQESSKDPGSCSRLCDPDDICDVLQNDK 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43130g00001 258 PRINTS Disease resistance protein signature 14 28 - -
Trme43130g00001 258 PRINTS Disease resistance protein signature 109 123 - -
Trme43130g00001 258 Pfam NB-ARC domain 7 156 IPR002182 GO:0043531
Trme43130g00001 258 SUPERFAMILY "Winged helix" DNA-binding domain 144 254 IPR036390 -
Trme43130g00001 258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 168 IPR027417 -
Trme43130g00001 258 Gene3D - 72 158 IPR042197 -
Trme43130g00001 258 Gene3D - 2 67 IPR027417 -
Trme43130g00001 258 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 254 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43130g00001 Trme-Chr43130 228 1001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43130g00001 14 256 WRKY Transcription Factor Family AT5G45050 38.934 2.74e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43130g00001 - - mtr:11417201 361.688