Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme43111g00001 | ATGAAGTTCAAGAATCTTAACGGCGGTGACAATAGTCATCCGCCTTCTTCGTCTTCGCTTCATTGGGGAAACTGTTCTTCTTCGGTTTCCGAGGTTGAACAAGAGCAAGAAGATGTTGCTAGGTGTTTGATGATGTTGTCTAGAGATGCTACTTACAAGGGTACTCGTTTTGCTATGGTGACTGAGTCTTCTGATAACAACTCGGTTGTTCTCGAAGCAAAATCGAAATCTCCTTCTGTTGATACCAAGTTTGCTGCTATCAAGAACATTGTTGGTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNGTTTCTGATAATTCTGATTCTGGGTATTTCACATATGGTCCTAGAAAAGTAGAATCAGATGATTCGAGTGACGCGTTTTTCATGAATGATGTTAAATCTTCAAAAGCCGGACTCATCTCTGGATTTGAAGATCATGATTTTGATTCAAGGAAGAAGATAATGAGCAGAGAAAAAAGAAACAGAAACAGTAATGAATTCAAGAAACTAGCTTTGGATGATTCAAGGAAGAGGCAAAATTTAGTTGAAAGTTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANTAACAATGATGAAAACTATGAGAGTTTGAAAATTGAAAGAGAGAGTTTTTCTGAAGATTCAGCTTATGAAAGTGATGAAAATAGCACTGATAGTGATTCATATCCTGCTCCACCAAAGACACAAAGCAATAGGAACATAAATGCAAAGACTAAGAAGTTAACAAGCAAAGGAAAGAAGAAAATGAAGTCAAAGAAAAGCAAAGAACATGAGTGTCCAATTTGCAACAAGATTTTTAGGTCAGGACAAGCTTTAGGGGGTCACAAAAGGTCCCATTTTGTTGGAGGGAATATTGATGAAAACACTTTTGTGATTAGACCA | 960 | 0.326 | MKFKNLNGGDNSHPPSSSSLHWGNCSSSVSEVEQEQEDVARCLMMLSRDATYKGTRFAMVTESSDNNSVVLEAKSKSPSVDTKFAAIKNIVGXXXXXXXXXXXXXXXXXXXXXXXXXXXVSDNSDSGYFTYGPRKVESDDSSDAFFMNDVKSSKAGLISGFEDHDFDSRKKIMSREKRNRNSNEFKKLALDDSRKRQNLVESXXXXXXXXXXXXNNDENYESLKIERESFSEDSAYESDENSTDSDSYPAPPKTQSNRNINAKTKKLTSKGKKKMKSKKSKEHECPICNKIFRSGQALGGHKRSHFVGGNIDENTFVIRP | 320 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme43111g00001 | 320 | Coils | Coil | 215 | 216 | - | - | |
| Trme43111g00001 | 320 | MobiDBLite | consensus disorder prediction | 241 | 264 | - | - | |
| Trme43111g00001 | 320 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 283 | 305 | IPR013087 | - | |
| Trme43111g00001 | 320 | Pfam | C2H2-type zinc finger | 283 | 305 | - | - | |
| Trme43111g00001 | 320 | SUPERFAMILY | beta-beta-alpha zinc fingers | 280 | 306 | IPR036236 | - | |
| Trme43111g00001 | 320 | Coils | Coil | 196 | 202 | - | - | |
| Trme43111g00001 | 320 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Trme43111g00001 | 320 | MobiDBLite | consensus disorder prediction | 265 | 279 | - | - | |
| Trme43111g00001 | 320 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 285 | 305 | IPR013087 | - | |
| Trme43111g00001 | 320 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 18 | 310 | - | - | |
| Trme43111g00001 | 320 | MobiDBLite | consensus disorder prediction | 220 | 234 | - | - | |
| Trme43111g00001 | 320 | MobiDBLite | consensus disorder prediction | 9 | 24 | - | - | |
| Trme43111g00001 | 320 | MobiDBLite | consensus disorder prediction | 199 | 282 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme43111g00001 | 26 | 319 | C2H2 Transcription Factor Family | AT1G26610 | 37.415 | 6.22e-37 | 135 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Trme43111g00001 | zf-C2H2_6 | 1.5e-10 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme43111g00001 | - | - | tpra:123908903 | 498.819 |