Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43043g00001 ATGATTTTCCTCTATTTTCTTGGTTTTGGCATCTCATTAGCTGAAAGCAAATCAACTATTGATACAAGTAGAGACCAGCCATCGGTTCCAGTAGTCTCTTCGACNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAAAGTTGAAGAGGAGCTTAAAATTGCTTCCAGGCTGCGAAAATTCTCTTTCAATGATCTTAAGTTGGCAACAAGAAATTTTCGGCCCGAGAGTCTTCTTGGTGAAGGTGGGTTTGGTTGTGTGTTCAAAGGATGGATTGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGCCTTACTGTTGCAGTCAAAACCCTAAACCATGATGGGCTCCAGGGTCATAAAGAATGGCTGGCTGAAGTAAATTATCTTGGTGATTTAGTTCATCAAAACCTTGTCAAACTTATAGGCTACTGTATTGAAGATGATCAAAGGTTGCTGGTATATGAATTTATGCCTCGAGGAAGCCTGGAAAACCACTTGTTTAGGA 526 0.3726 MIFLYFLGFGISLAESKSTIDTSRDQPSVPVVSSTXXXXXXXXXXXXXXXXKVEEELKIASRLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNYLGDLVHQNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFR 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43043g00001 175 ProSitePatterns Protein kinases ATP-binding region signature. 84 116 IPR017441 GO:0005524
Trme43043g00001 175 ProSiteProfiles Protein kinase domain profile. 78 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme43043g00001 175 SUPERFAMILY Protein kinase-like (PK-like) 58 174 IPR011009 -
Trme43043g00001 175 Pfam Protein tyrosine and serine/threonine kinase 82 173 IPR001245 GO:0004672|GO:0006468
Trme43043g00001 175 Coils Coil 52 63 - -
Trme43043g00001 175 FunFam Serine/threonine-protein kinase BIK1 46 163 - -
Trme43043g00001 175 PANTHER OS01G0588500 PROTEIN-RELATED 34 175 - -
Trme43043g00001 175 Gene3D Phosphorylase Kinase; domain 1 52 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43043g00001 Trme-Chr43043 112 746 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43043g00001 64 174 Glycoside Hydrolase AT3G07070 55.856 1.05e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme43043g00001 PK_Tyr_Ser-Thr 6.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43043g00001 - - gmx:100807510 280.026