Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43039g00001 TACAGAATAGCAATTGGGTCTCCTAGAGAGGCTAGTAATCCTGCTGCCATTAGAGCTGCTTTTGCAGAATTCTTCTCTATGATCATTTTTGTTTTTGCTGGCCAAGGCTCTGGGATGGCTTACAGCAAACTTACAAACAATGGAGGTGCAACTCCTGAAGGTCTCATAGTTGCATCATTATCTCATGCATTTGCCCTATTTGTGGCTGTTTCTGTTGGTGCAAACATTTCTGGTGGTCATGTCAACCCTGCAGTCACATTTGGTGCTTTCATTGGAGGAAACATTACCTTCTTGAGAAGTATTTTGTATTGGATTGC 317 0.4227 YRIAIGSPREASNPAAIRAAFAEFFSMIIFVFAGQGSGMAYSKLTNNGGATPEGLIVASLSHAFALFVAVSVGANISGGHVNPAVTFGAFIGGNITFLRSILYWIA 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43039g00001 106 SUPERFAMILY Aquaporin-like 12 106 IPR023271 -
Trme43039g00001 106 PANTHER AQUAPORIN-8 3 106 IPR034294 -
Trme43039g00001 106 ProSitePatterns MIP family signature. 80 88 IPR022357 -
Trme43039g00001 106 Gene3D Glycerol uptake facilitator protein. 1 106 IPR023271 -
Trme43039g00001 106 Pfam Major intrinsic protein 12 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme43039g00001 106 PRINTS Major intrinsic protein family signature 99 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme43039g00001 106 PRINTS Major intrinsic protein family signature 18 37 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme43039g00001 106 PRINTS Major intrinsic protein family signature 62 86 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43039g00001 Trme-Chr43039 1 1019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43039g00001 2 106 Major Intrinsic Protein MIP AT4G01470 85.714 3.63e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43039g00001 K09873 - gmx:100818197 194.126