Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme43014g00001 ATGGCCTTGTTTGTAAATTTCCTTTTCATCATTCTCATCCTTTTACCATCATTTGATAAGGTTCTCTCATTCCCAGATGAAATTCCCTCAAAAATCCAAACTCAAGACATGCAAGCTTTGATTGCACAAGCCTGCATGAATATTGAAAACCAAAACTCATGCCTCGCAAACATTCATAACGAGCTAACAAGAACTGGTCCTCCAAGCGCAACTTCTGTCATTAATGCTGCACTCAGAACCACGATCAATGAAGCCCTAGGTGCCATCAACAACATGACAAAGATCAGTACATTTTCTGTTAATAACCGCGAGCAACTTGCCATAGAAGATTGCAAGGAGCTCGTTGATTTCTCTGTGTCAGAGCTTGCATGGTCATTAGGGGAGATGAGGAGAATTCGAGCTGGCGACAGAACCGCACAATATGAGGGAAACCTTGAAGCTTGGCTAAGTGCGGCGCTTAGCAACCAAGACACGTGCATTGAAGGCTTTGAAGGCACTGATAGACGTCTCGAGAGTTATATTAGTGGAAGCTTAACACAAGTCACTCAGCTTATCAGCAATGTTCTGTCTTTGTACACTCAACTTCATAGCTTACCCTTTCGCCCTCGGAGGAACACTACTACCCTGCACGAAACACGTACTGATGAAAGCTGGGAGTTTCCTGAATGGATGACCGAGGCTGATCAAGAGCTCCTTAAATCTAAACCACACGGTA 715 0.4406 MALFVNFLFIILILLPSFDKVLSFPDEIPSKIQTQDMQALIAQACMNIENQNSCLANIHNELTRTGPPSATSVINAALRTTINEALGAINNMTKISTFSVNNREQLAIEDCKELVDFSVSELAWSLGEMRRIRAGDRTAQYEGNLEAWLSAALSNQDTCIEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLHSLPFRPRRNTTTLHETRTDESWEFPEWMTEADQELLKSKPHG 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme43014g00001 238 FunFam Pectinesterase 38 197 - -
Trme43014g00001 238 Pfam Plant invertase/pectin methylesterase inhibitor 40 191 IPR006501 GO:0004857
Trme43014g00001 238 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 196 IPR035513 -
Trme43014g00001 238 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 196 IPR035513 -
Trme43014g00001 238 SMART PMEI_2 36 191 IPR006501 GO:0004857
Trme43014g00001 238 NCBIfam pectinesterase inhibitor domain 5 196 IPR006501 GO:0004857
Trme43014g00001 238 CDD PMEI-like_4 53 195 - -
Trme43014g00001 238 PANTHER PECTINESTERASE 13 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme43014g00001 Trme-Chr43014 1 715 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme43014g00001 10 232 Carbohydrate Esterase AT3G05620 40.773 5.46e-52 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme43014g00001 K01051 - gmx:100810565 350.132