Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4297g00001 ATGCAACTTCAAACACTCACCTTAGATAATAATATGTTCATGGGTCCTATTCCTAGATGGGCTGGTAATGATCCTTGTGGAGGTCCATGGTTTGGGTTGGTATGCATCAACTCAAACATATTGAGAATCATTATACCTGAAAAAAAGCTAAATGGTAGAGTTCCCAGTAGTTTTACCAAATTAAAATCTTTGAAGTCCTTGGACTTAAGTCTAAATAATCTTGAGCCTCCATTACCAAATTTTAATGATGGCGTCATGGTTAAGATTAGTGGTAACCCACTTTTTGTTAACCAAACTCAAAAGAGTCCCGTTTCTCGTAGAAGTCAACCACCTTCATCTAGTCGAAGTTCAAGCTCTAATAAATTCAAAACAGTAGGAATAGTGGCTGGAGTCGTAGTCTTTGTGTTTGTAGCTCTTGTTGTGATTATTTATCTCATAAGACACTATTGTTTGAAGAAGATAAAAACTTCAATTGATGGTTCAAGCTCGGTTGTACAATTGAATGTGGTAAAAGCACAGGACCCGCTTGCCATTTCAATCAAAGTATTACGCAAGGCTACAAACAGTTTTGCTACGGAAAATGAGCTGGGACACGGTGGTTTTGGCTCTGTTTATAAAGGTGAACTCCTAGATGGGACTAAAATTGCGGTAAAAAGAATGGAAGGTGGAGGTAGTAGCAAGAAAAAAATCGTTGATTTTCAAGCGGAAATTGACGTCCTTTCAAAGGTTAGGCATCAAAATTTGGTATCGTTATTGGGCTATTGCATTGAAGACAATGAGTGGCTTTTGGTATATGAGTACCTCCCTCTTGGTACTCTAAGCAGTCATCTTTTCCATAGCAAAGACTTGAAACTTGATCCTTTGTCATGGTCACAGAGGCTTACAATAGCACTTGATGTTGCTAGAGGATTGCAATACCTTCATAGTCTTTCTGGACAAACCGTCATCCATCGAGATCTCAAGTGTTCAAATATTCTACTTGGAAATGACTTTCGAGCAAAAGTTTCTGATTTTGGTCTTGCAAGACTCGCACTTGATCATGATAAATCGATATCAACAAAACTTGCTGGAACATTTGGATACATTGCCCCTGAATGTGGTG 1102 0.3848 MQLQTLTLDNNMFMGPIPRWAGNDPCGGPWFGLVCINSNILRIIIPEKKLNGRVPSSFTKLKSLKSLDLSLNNLEPPLPNFNDGVMVKISGNPLFVNQTQKSPVSRRSQPPSSSRSSSSNKFKTVGIVAGVVVFVFVALVVIIYLIRHYCLKKIKTSIDGSSSVVQLNVVKAQDPLAISIKVLRKATNSFATENELGHGGFGSVYKGELLDGTKIAVKRMEGGGSSKKKIVDFQAEIDVLSKVRHQNLVSLLGYCIEDNEWLLVYEYLPLGTLSSHLFHSKDLKLDPLSWSQRLTIALDVARGLQYLHSLSGQTVIHRDLKCSNILLGNDFRAKVSDFGLARLALDHDKSISTKLAGTFGYIAPECG 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4297g00001 367 Gene3D Transferase(Phosphotransferase) domain 1 268 367 - -
Trme4297g00001 367 Gene3D Phosphorylase Kinase; domain 1 152 267 - -
Trme4297g00001 367 Pfam Protein tyrosine and serine/threonine kinase 192 366 IPR001245 GO:0004672|GO:0006468
Trme4297g00001 367 SUPERFAMILY L domain-like 3 79 - -
Trme4297g00001 367 MobiDBLite consensus disorder prediction 99 120 - -
Trme4297g00001 367 ProSiteProfiles Protein kinase domain profile. 190 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4297g00001 367 Gene3D Ribonuclease Inhibitor 19 94 IPR032675 -
Trme4297g00001 367 FunFam receptor-like protein kinase FERONIA 153 267 - -
Trme4297g00001 367 FunFam Os07g0541700 protein 268 358 - -
Trme4297g00001 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 315 327 IPR008271 GO:0004672|GO:0006468
Trme4297g00001 367 PANTHER OSJNBA0070M12.3 PROTEIN 20 365 - -
Trme4297g00001 367 ProSitePatterns Protein kinases ATP-binding region signature. 196 218 IPR017441 GO:0005524
Trme4297g00001 367 SMART serkin_6 190 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4297g00001 367 SUPERFAMILY Protein kinase-like (PK-like) 174 366 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4297g00001 Trme-Chr4297 907 2215 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4297g00001 2 365 Receptor kinase-like Gene Family AT2G23950 35.657 8.04e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trme4297g00001 PK_Tyr_Ser-Thr 5.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4297g00001 K00924 - gmx:100815045 320.857