Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42973g00001 ATGGTACCGAAGAAGAGTTTGAAGAGATTTGTGGTGTATGTGAAGAAAGGGGAATATGTAGAGAATATTGATTTGGATAAGAATACATGGAATGTGATGATTTACGGTGATGGTATGACGGAAACCGTCGTAAGTGGTAGCCGGAATTTCATGGACGGCACACCTACGTTTGAAACTGCAACTTTTG 187 0.4064 MVPKKSLKRFVVYVKKGEYVENIDLDKNTWNVMIYGDGMTETVVSGSRNFMDGTPTFETATF 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42973g00001 62 SUPERFAMILY Pectin lyase-like 2 62 IPR011050 -
Trme42973g00001 62 Gene3D - 1 62 IPR012334 -
Trme42973g00001 62 PANTHER PECTINESTERASE 3 62 - -
Trme42973g00001 62 Pfam Pectinesterase 2 62 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42973g00001 Trme-Chr42973 800 986 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42973g00001 2 62 Carbohydrate Esterase AT1G53840 72.131 3.78e-27 99.8