Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42895g00001 GTGAAATCTGGTAACATCTTATTAGACAGTGACTTCAGCCCAAAACTGTCAGATTTTGGGCTTGCTAAACTAGGACCTGTTGGAGACAATACTCATGTTTCAACCAGAGTGATGGGTACATATGGCTACTGTGCGCCAGAATATGCGATGAGTGGAAAATTAACCCTCAAATCTGATATCTACAGCTTTGGTGTGGTTTTGTTGGAGTTGATCACTGGACGCAGGGCAATAGATACAAGTAAAAAACCTGGAGAGCAAAACTTAGTTTCATGGTCTCGCCCATATATTAACGACCGGAGAAAGTTTGTACACATGGCTGACCCTCTTTTGCAAGGACGCTTCCCTGCCCGATGTTTGCATCAAGCAATTGCTATAACTGCTATGTGTCTCCAGGAGCAACCAAAAGTCCGTCCACTCATCGGTGATATTGTTGTTGCACTGGAATACCTAGCTTCTCAGAGTACCCCTG 469 0.4435 VKSGNILLDSDFSPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDTSKKPGEQNLVSWSRPYINDRRKFVHMADPLLQGRFPARCLHQAIAITAMCLQEQPKVRPLIGDIVVALEYLASQSTP 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42895g00001 156 Gene3D Transferase(Phosphotransferase) domain 1 1 155 - -
Trme42895g00001 156 ProSiteProfiles Protein kinase domain profile. 1 150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme42895g00001 156 Pfam Protein kinase domain 1 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme42895g00001 156 SUPERFAMILY Protein kinase-like (PK-like) 1 145 IPR011009 -
Trme42895g00001 156 PANTHER OS07G0668900 PROTEIN 2 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42895g00001 Trme-Chr42895 1 1020 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42895g00001 1 152 Glycoside Hydrolase AT3G07070 63.158 4.85e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trme42895g00001 Pkinase 5.5e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42895g00001 - - mnt:21407579 278.1