Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42888g00001 GCTAATTTGGTTCGTGATAACAATGTTCAAGCGATTCATGATCAAACACCTGACTTTAGGAACTGGTTGAGTGCTGTTATATCGTACCAAGAATCATGCACAGAAGGGTTCAATAATGGGACAAGCGGAGAGGAACAGGTAAAGAAACAGTTGCAAACAGAAAGTTTGGATAAGATGGAGAAACTAACTGGAATTACACTTGACATTGTAACAAGTATGGTTCATCTCCTTCAGACTTTCGACTTGAAGCTAGATTTGAATCCATCTTCTCGTCGTCTTCTGGAGGTTAATGAGCTTGACAATGAAGGATTGCCCAAGTGGTTCTCGGCTGCTGATCGTAAGCTATTGGCTAAGGTAGGTGGTGGTGGTGGTGGTGGNNNNNNNGGTGGAGCTCCTGCACCAAATGCAGTAGTTGCTAAAGATGGTAGTGGTCAATTTAAAACAGTTAAAGAGGCTATTGACTCATATCCTAAGGGCTTCAAAGGCAGATTCATTATCTATGTTAAGGCCGGAGTCTATGACGAATACATTACCGTTCCCAAAACAGCAATTAATATTCTTATGTATGGCGACGGTCCTACAAAGAGTATTATCACCGGTCACAAAAACTTCGTCGACGGCGTCAAAACAATGCAAACTGCCACTTTTGCAAATGTTGCACCCGGATTCATTGCAAAGTCAATAGCATTCGAGAACACAGCTGGATGGGAAAAACATCAAGCAGTGGCATTTAGAAACCAAGGAGATATGTCAGCATTCTTCGACTGCGCCATGCACGGCTACCAAGACACATTATATGTTCAAGCCAATCGTCAATTCTACCGCAACTGTGAAATATCCGGTACCATAGACTTCATATTCGGCGCATCTCCAACCCTAATTCAAAACTCTAAAATCATTGTGCGAAAGCCAGGACCGAGTCAATTCAACACCGTAACCGCAGA 944 0.4258 ANLVRDNNVQAIHDQTPDFRNWLSAVISYQESCTEGFNNGTSGEEQVKKQLQTESLDKMEKLTGITLDIVTSMVHLLQTFDLKLDLNPSSRRLLEVNELDNEGLPKWFSAADRKLLAKVGGGGGGGXXGGAPAPNAVVAKDGSGQFKTVKEAIDSYPKGFKGRFIIYVKAGVYDEYITVPKTAINILMYGDGPTKSIITGHKNFVDGVKTMQTATFANVAPGFIAKSIAFENTAGWEKHQAVAFRNQGDMSAFFDCAMHGYQDTLYVQANRQFYRNCEISGTIDFIFGASPTLIQNSKIIVRKPGPSQFNTVTA 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42888g00001 314 ProSitePatterns Pectinesterase signature 2. 279 288 IPR033131 -
Trme42888g00001 314 Gene3D Invertase/pectin methylesterase inhibitor family protein 4 74 IPR035513 -
Trme42888g00001 314 SUPERFAMILY Pectin lyase-like 131 314 IPR011050 -
Trme42888g00001 314 Pfam Plant invertase/pectin methylesterase inhibitor 14 69 IPR006501 GO:0004857
Trme42888g00001 314 Pfam Pectinesterase 135 314 IPR000070 GO:0030599|GO:0042545
Trme42888g00001 314 Gene3D - 131 314 IPR012334 -
Trme42888g00001 314 FunFam Putative pectinesterase 57 132 314 - -
Trme42888g00001 314 PANTHER PECTINESTERASE 13 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42888g00001 Trme-Chr42888 1 1020 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42888g00001 2 314 Carbohydrate Esterase AT2G26450 42.812 2.03e-78 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42888g00001 K01051 - gmx:100775246 494.582