Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42868g00001 ATGGTTGTGGGTGGATCAGACACATCCTCCAACACAATTGAGTTTGCACTGGCAGAAATGATGAACAACCCAGAAGTAATGAAGAAAGTTCAAGAGGAGTTAGAAGCTGTGGTTGGAAAAGATAACTCGGTAGAAGAGTCTCACATTCATAAGCTACCCTACTTACATGCAGTGATGAAAGAAACACTTCGTTTGCACCCAGCACTTCCACTTTTAGTCCCTCACTGTCCAAGTGAAACCACCAATGTTGGAGGCTACACAATTCCAAAGGGATCTCGTGTGTTTGTGAACGTTTGGGCTATTCATAGAGACCCTTCCATTTGGGAGAAACCACTAGAATTTGATCCTACAAGGTTCTTGGATGGTAAATGGGATTACAGTGGAAATGACTTCAATTATTTCCCCTTTGGTTCTGGAAGAAGGATTTGTGCTGGAATAGCAATGGCTGAGAGGACTGTTTTGTACTTTATAGCTACCCTTGTGCACTTGTTTGACTGGACTATACCACAAGGAGAAAAGTTGGAG 525 0.4267 MVVGGSDTSSNTIEFALAEMMNNPEVMKKVQEELEAVVGKDNSVEESHIHKLPYLHAVMKETLRLHPALPLLVPHCPSETTNVGGYTIPKGSRVFVNVWAIHRDPSIWEKPLEFDPTRFLDGKWDYSGNDFNYFPFGSGRRICAGIAMAERTVLYFIATLVHLFDWTIPQGEKLE 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42868g00001 175 PRINTS E-class P450 group I signature 133 143 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme42868g00001 175 PRINTS E-class P450 group I signature 56 74 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme42868g00001 175 PRINTS E-class P450 group I signature 13 39 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme42868g00001 175 PRINTS E-class P450 group I signature 97 121 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme42868g00001 175 PRINTS E-class P450 group I signature 143 166 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme42868g00001 175 Gene3D Cytochrome P450 1 174 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme42868g00001 175 FunFam Predicted protein 2 175 - -
Trme42868g00001 175 PRINTS P450 superfamily signature 134 143 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme42868g00001 175 PRINTS P450 superfamily signature 57 68 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme42868g00001 175 PRINTS P450 superfamily signature 4 21 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme42868g00001 175 PRINTS P450 superfamily signature 143 154 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme42868g00001 175 Pfam Cytochrome P450 1 173 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme42868g00001 175 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 136 145 IPR017972 GO:0005506|GO:0016705
Trme42868g00001 175 PANTHER OS08G0547900 PROTEIN 1 175 - -
Trme42868g00001 175 SUPERFAMILY Cytochrome P450 1 173 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42868g00001 Trme-Chr42868 41 565 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42868g00001 1 175 Cytochrome P450 AT4G12330 69.714 8.25e-93 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42868g00001 - - vvo:131637263 338.191