Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42860g00001 AAAAATATATGCTCCAAGATTGCTCCATCTATATTTGGGCATGATGATGTCAAAAAGGCTGTGGCCTGTCTTCTATTTGGAGGGTCAAGAAAGCATTTGCCAGATGGGGTGAGATTAAGAGGTGATATCAATGTGCTACTTCTTGGGGATCCATCTACAGCAAAGTCACAGTTTCTCAAGTTTGTTGAAAAGACTGCTCCTATTGCTGTTTATACTTCTGGAAAAGGCTCATCAGCTGCTGGCCTCACAGCCTCTGTAATCCAAGATAGCAGTACTCGTGAGTTTTATCTTGAAGGAGGAGCCATGGTCTTGGCAGATGGGGGTGTTGTCTGCATTGATGAGTTTGACAAGATGAGACCAGAAGATAGGGTTGCCATTCATGAAGCCATGGAACAGCAAACTATATCCATAGCCAAAGCAGGAATAACAACCGTTCTTAATTCAAGGACTTCTGTTCTAGCTGCTGC 467 0.4347 KNICSKIAPSIFGHDDVKKAVACLLFGGSRKHLPDGVRLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIQDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAA 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42860g00001 156 PRINTS Mini-chromosome maintenance (MCM) protein family signature 40 55 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme42860g00001 156 PRINTS Mini-chromosome maintenance (MCM) protein family signature 128 141 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme42860g00001 156 PRINTS Mini-chromosome maintenance (MCM) protein family signature 152 156 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme42860g00001 156 PRINTS Mini-chromosome maintenance (MCM) protein family signature 100 114 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme42860g00001 156 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 2 156 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trme42860g00001 156 Gene3D - 1 156 IPR027417 -
Trme42860g00001 156 ProSiteProfiles MCM family domain profile. 1 156 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme42860g00001 156 ProSitePatterns MCM family signature. 108 116 IPR018525 GO:0003677|GO:0005524|GO:0006260
Trme42860g00001 156 Pfam MCM P-loop domain 2 156 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme42860g00001 156 SMART mcm 1 156 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trme42860g00001 156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 155 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42860g00001 Trme-Chr42860 1 1021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42860g00001 1 156 Core DNA Replication Machinery Family AT2G07690 95.513 3.57e-102 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42860g00001 K02209 - cave:132184345 300.827