Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42850g00001 ATGAATGAGATCAAGCTCCTTTCTTCGGTGAGTCACCCAAATTTGGTTCGCCTCCTAGGTTGCTGCATCGAAGAGGGAGAGCAGATACTTGTTTATGAATATATGCCAAATGGAACGTTGTCTGAGCATTTGCAAAGAGAGAGAGGTAAAGGTCTACCGTGGACAATACGACTCACCATTGCCTCCGAAACCGCTAATGCTATAGCTTATCTCCATTCTTCAATTCATCCCCCAATTTACCACAGAGATATAAAATCCAGTAATATACTATTGGATTATAACTACAAATCGAAAGTAGCTGATTTTGGACTTTCTAGGCTTGGCATGATAGAGACATCACATATTTCAACTGCTCCGCAGGGTACTCCAGGCTATGTCGATCCTCAATACCACCAGAACTTCCATCTTTCTGATAAAAGTGATGTATACAGCTTTGGAGTGGTTTTGGTAGAGATAATAACTGCCATGAAAGTGGTTGATTTTGCCAGACCTCAAAGTGAGGTTAATTTAGCTGCACTTGCTGTTGATAGGATTAGGAGGGGTTCTATAGATGAGATTGTAGATCCCTTCCTTGAACCAAATAGAGATGCTTGGACTCTATATTCCATTAATAAGGTGGCTGAGCTTGCATTTAGATGTCTTGCTTTTCATAGTGACNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGAAACCATATGTTTGGGTTCGTCGATTGGTTCCGCGAGTTCGTCGCCTCGCAATGGAAGTGAGAAGTCATTGAGTGGTCTTATGTTAATGAAGGTAGGGCAAGAGAGTGAGGAATTGATTGTTCCACCTAAGAGTGAGAACTTGTTGCAATCTATGGAATTGGAAGTGAAGGACAACTCCCCTGTATCGGTGCATAATCCTTGGTCGAGTGGACCGAGCTCGCCTTCA 957 0.3939 MNEIKLLSSVSHPNLVRLLGCCIEEGEQILVYEYMPNGTLSEHLQRERGKGLPWTIRLTIASETANAIAYLHSSIHPPIYHRDIKSSNILLDYNYKSKVADFGLSRLGMIETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFARPQSEVNLAALAVDRIRRGSIDEIVDPFLEPNRDAWTLYSINKVAELAFRCLAFHSDXXXXXXXXXXXXXXXXXXXXXXXXETICLGSSIGSASSSPRNGSEKSLSGLMLMKVGQESEELIVPPKSENLLQSMELEVKDNSPVSVHNPWSSGPSSPS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42850g00001 319 SUPERFAMILY Protein kinase-like (PK-like) 1 216 IPR011009 -
Trme42850g00001 319 MobiDBLite consensus disorder prediction 281 319 - -
Trme42850g00001 319 Pfam Protein tyrosine and serine/threonine kinase 1 156 IPR001245 GO:0004672|GO:0006468
Trme42850g00001 319 FunFam Wall-associated receptor kinase-like 20 35 226 - -
Trme42850g00001 319 ProSiteProfiles Protein kinase domain profile. 1 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme42850g00001 319 Gene3D Phosphorylase Kinase; domain 1 1 35 - -
Trme42850g00001 319 Coils Coil 244 245 - -
Trme42850g00001 319 ProSitePatterns Serine/Threonine protein kinases active-site signature. 79 91 IPR008271 GO:0004672|GO:0006468
Trme42850g00001 319 MobiDBLite consensus disorder prediction 295 319 - -
Trme42850g00001 319 Gene3D Transferase(Phosphotransferase) domain 1 36 220 - -
Trme42850g00001 319 SMART serkin_6 1 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme42850g00001 319 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 219 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42850g00001 Trme-Chr42850 1 957 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42850g00001 1 319 Receptor kinase-like Gene Family AT2G23450 65.204 1.06e-140 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trme42850g00001 PK_Tyr_Ser-Thr 1.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42850g00001 - - gmx:100779130 470.7