Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42845g00001 ATGAAAGTTGAGAAAGTTCCTGATTCTACATATGACATGATTGGTGGTTTAGACCAACAAATCAAAGAAATCAAAGAGGTCATTGAGCTTCCAATTAAACATCCTGAGCTGTTTGAAAGTCTTGGAATAGCTCAACCAAAGGGTGTCTTGCTCTATGGGCCACCTGGTACAGGAAAAACATTATTGGCTAGGGCAGTGGCACATCATACTGATTGTACATTCATCAGGGTGTCTGGTTCTGAACTAGTTCAGAAATACATTGGAGAAGGGTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAG 305 0.4098 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42845g00001 101 FunFam 26S proteasome regulatory subunit 8 2 86 - -
Trme42845g00001 101 Gene3D - 1 101 IPR027417 -
Trme42845g00001 101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 101 IPR027417 -
Trme42845g00001 101 Pfam ATPase family associated with various cellular activities (AAA) 49 99 IPR003959 GO:0005524|GO:0016887
Trme42845g00001 101 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 1 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42845g00001 Trme-Chr42845 267 857 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42845g00001 14 98 Calmodulin-binding Proteins AT3G56690 40.000 2.19e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42845g00001 K03066 - csin:114264916 203.371