Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42821g00001 ATGGCACTCAAATTTGCCGTGGAGTTAGGAATAGCAGATATAATCCACAACCATGGAAAACCTATGACACTTGCTGAATTAGCTTCATCTTTAAAACTCCACCCTTCTAAAGTTAGTATCCTCTATCGATTCATGCGCTTGCTAACACACAATGGTTTCTTCGCAAAAACAATGGTAGGTGAAGAAACAGAAGCGTATTATTCTCTCACATTGCCATCAAAGCTTCTCATCAGAGGCAAACCGATGTGTTTAGCATTCTTTGCTGGCGGTCATCCAAATTATATGAACATGTGGAACTCCATCAAGAAATGGTTGACTGAGGACAAGGAACTCAGCCTATTTGAGAGTGCAAATGGGGGGGAGACATTCTGGGATACGCTAAACAAAGATTCTGAATCGGATAACCTGCGTTGTTTTCAAGAGGCTATGGAAGCTGATTCTCAAATGTTTAAGCTTGCACTTAAAGATTGCAAGCATGTGTTTGAAGGTTTGGAGACTTTGGTTGATGTGGGAGGTGGGACTGGAGTTGTTGCAAAACTCATTCATGAAATATTTCCTGATATTAAATGCACTGTTTTGGATCAACCACAGGTTGTTGCTAACTTAACTGGAAATCAAAATTTGAACTTTGTTGGTGGAGATATGTTCAAATCTATCCCTCATGCAGATGCTGTTTTACTCA 682 0.4003 MALKFAVELGIADIIHNHGKPMTLAELASSLKLHPSKVSILYRFMRLLTHNGFFAKTMVGEETEAYYSLTLPSKLLIRGKPMCLAFFAGGHPNYMNMWNSIKKWLTEDKELSLFESANGGETFWDTLNKDSESDNLRCFQEAMEADSQMFKLALKDCKHVFEGLETLVDVGGGTGVVAKLIHEIFPDIKCTVLDQPQVVANLTGNQNLNFVGGDMFKSIPHADAVLL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42821g00001 227 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 86 227 IPR029063 -
Trme42821g00001 227 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 227 IPR016461 GO:0008168
Trme42821g00001 227 Pfam Dimerisation domain 1 49 IPR012967 GO:0046983
Trme42821g00001 227 SUPERFAMILY "Winged helix" DNA-binding domain 1 80 IPR036390 -
Trme42821g00001 227 Pfam O-methyltransferase domain 98 227 IPR001077 GO:0008171
Trme42821g00001 227 PANTHER O-METHYLTRANSFERASE 1 225 IPR016461 GO:0008168
Trme42821g00001 227 Gene3D - 1 76 IPR036388 -
Trme42821g00001 227 Gene3D Vaccinia Virus protein VP39 81 227 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42821g00001 Trme-Chr42821 1 682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42821g00001 1 227 Monolignol Biosynthesis Gene Families AT3G53140 35.146 3.00e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42821g00001 K22588 - tpra:123920923 370.548