Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4277g00001 ATGTCAATCAGTGACGTTTTTGCTAATCATTCCCGTCTTGATACCCTGGATCTATCATTTAATAACTTTTCCGGGGATCTTCCACCTTCGTTTGGTTCACTGTCAAGTCTCTCTTCTCTTTTCTTGCAGAAGAATCAGTTGACTGGCTCACTTAGTGTTCTTGTTGGTTTGCCGTTGGATAATTTAAATGTCGCAAACAATAATTTCAGTGGATGGATACCTCATGAGCTTAAATCTATCGATAATTTCATATATGATGGAAATTCTTTCAATGATGGCCCTGCACCTCCTTCGCCAGAATCTACTTCGTCTCCACCTAGTGAACCTCATAAACGTACTCATCACTCCGGGCCTGGTTCACATACTAAAACACAGGGTTCTAATGATCAAAATTCCGATGACGATAAGGGAACGTCAGCGGGGGCTATTGTTGGGATTGTTTTAGGTTCAGTGTTGGTGTTTTCTGTTGTTCTAGTTGCTCTTGTTTTCTGTATCCGAAAACTAAAAGGGAGGGAAAAGGGTGCAAGAACTTCAAACGGGAGCCTTCCTCCCAGAATAATCAATGTAACTCCTCAGATGCAAGAGCAAAGGNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNATAAAAAGTGGATCGGTAAAGCAGATGAGGTCTCCCATCACTTCCACATCGTACACAGTTGCTACGCTTCAGAGTGCAACAAATAGCTTCAGTCAAGAATTTATTATCGGTGAAGGTTCTCTTGGTCGAGTTTACAGGGCTGAATTCCCAAATGGGAAGGTAATGGCCGTTAAGAAGATTGACAATGCAGCACTGTCYTTACAAGAGGAAGACAATTTTCTTGAAGCTATTTCGAATATGTCACGCTTGCGGCATCCGAAYGTTGTTACACTGGCTGGATATTGTGCAGAACATGGCCAACGACTTCTAATTTATGAATATATTGGAAATGGAAATCTGCACGACATGCTCCATTTTGCTGAAGATAGCAGTAAAGCTTTACCTTGGAATGCACGTGTACGCATAGCTCTTGGCACAGCCCGGGCCTTAGAGTACGTATATCTGGCAATGACATATTTAGTCTCTCCTCAAAAAGGCCTTGACAGGCTATCCCATCCTCTAGCCTTTTCCCCCAAGTTTATTGTTTTAGAGTCTGTTTGA 1206 0.3964 MSISDVFANHSRLDTLDLSFNNFSGDLPPSFGSLSSLSSLFLQKNQLTGSLSVLVGLPLDNLNVANNNFSGWIPHELKSIDNFIYDGNSFNDGPAPPSPESTSSPPSEPHKRTHHSGPGSHTKTQGSNDQNSDDDKGTSAGAIVGIVLGSVLVFSVVLVALVFCIRKLKGREKGARTSNGSLPPRIINVTPQMQEQRXXXXXXXXXXXXXXXXXXXXXXXXXIKSGSVKQMRSPITSTSYTVATLQSATNSFSQEFIIGEGSLGRVYRAEFPNGKVMAVKKIDNAALSLQEEDNFLEAISNMSRLRHPNVVTLAGYCAEHGQRLLIYEYIGNGNLHDMLHFAEDSSKALPWNARVRIALGTARALEYVYLAMTYLVSPQKGLDRLSHPLAFSPKFIVLESV 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4277g00001 401 Gene3D Ribonuclease Inhibitor 1 96 IPR032675 -
Trme4277g00001 401 Pfam Protein tyrosine and serine/threonine kinase 257 368 IPR001245 GO:0004672|GO:0006468
Trme4277g00001 401 ProSiteProfiles Protein kinase domain profile. 252 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4277g00001 401 SUPERFAMILY L domain-like 4 83 - -
Trme4277g00001 401 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 219 329 - -
Trme4277g00001 401 SUPERFAMILY Protein kinase-like (PK-like) 229 369 IPR011009 -
Trme4277g00001 401 SMART tyrkin_6 252 401 IPR020635 GO:0004713|GO:0006468
Trme4277g00001 401 Coils Coil 193 197 - -
Trme4277g00001 401 Gene3D Transferase(Phosphotransferase) domain 1 229 369 - -
Trme4277g00001 401 MobiDBLite consensus disorder prediction 119 137 - -
Trme4277g00001 401 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 3 371 IPR046959 -
Trme4277g00001 401 MobiDBLite consensus disorder prediction 88 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4277g00001 Trme-Chr4277 239 2185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4277g00001 1 369 Strubbelig Receptor Gene Family AT4G22130 57.297 2.34e-136 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trme4277g00001 PK_Tyr_Ser-Thr 1.1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4277g00001 - - gmx:100781455 474.552