Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42760g00001 TTGCAGCTTGAGAATGTACTTTTGGATGCCAAAGGGAACATAAAGATAACTGATTTTAACCTAAGTGCTTTGCCACAACATTGCAGGGCAGATGGGTTGCTGCATACAACTTGTGGAAGTCCGAATTATGTTGCTCCTGAGATTCTTGCCAATAGAGGCTATGACGGTGCAAAATCCGATATTTGGTCATGTGGTGTTATCTTATATGTAATTCTAACAGGATACCTTCCTTTTGATGATAGAAATCTTGCAGTTCTCTATCAAAAGATTTTCAAAGGAGAAGTTCAGATACCAAGATGGTTGTCACCTGGTGCTCAAAACATAATAAAGAGAATTCTTGATCCCAATCCTAAAACCCGAATAACAATGTCTATGATCAAAGAAGATGAATGGTTTAAGCAGGGTTATAATCCTGCAAATCTAGACGATGAGGAAGAGGATGTTTACATTGATGATGAAGCCTTTTCCATCCAAGAAGTGGTATACTTTTGCACTTTAAGCTATCTTCCATCGGTCTTTTTAAATAGCAGCTATAGCAGTGCTATAGTGTAG 552 0.3804 MQLENVLLDAKGNIKITDFNLSALPQHCRADGLLHTTCGSPNYVAPEILANRGYDGAKSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGEVQIPRWLSPGAQNIIKRILDPNPKTRITMSMIKEDEWFKQGYNPANLDDEEEDVYIDDEAFSIQEVVYFCTLSYLPSVFLNSSYSSAIV 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42760g00001 183 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 144 - -
Trme42760g00001 183 Pfam Protein kinase domain 3 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme42760g00001 183 SUPERFAMILY Protein kinase-like (PK-like) 3 163 IPR011009 -
Trme42760g00001 183 SMART serkin_6 1 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme42760g00001 183 Gene3D Transferase(Phosphotransferase) domain 1 1 169 - -
Trme42760g00001 183 FunFam Maternal embryonic leucine zipper kinase 1 167 - -
Trme42760g00001 183 ProSiteProfiles Protein kinase domain profile. 1 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42760g00001 Trme-Chr42760 2 1001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42760g00001 1 160 CBL-interacting serine-threonine protein kinases AT3G17510 77.640 2.00e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trme42760g00001 Pkinase 1.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42760g00001 K07198 - gmx:100815660 293.123