Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42707g00001 GGTAGATCGGATTCATGTGCTCCTTCCAGCTCTAAGGCATGTCGAGAGAAGCTGCGGAGGGATAAGCTGAATGACAAGTTTGTTGAATTAGGCTCCTTCTTGGAGCCTGGAAGGCCTCCCAAAACTGACAAGGCAGCAATTCTGATCGATGCTGCCCGCATGGTGAAACAGTTGCGGGGTGAAGCCCAGAAGTTGAAAGACTCAAATTCAAATATTCAAGAGAAGATTAAAGAGTTGAAGGTTGAGAAAAATGAACTCCGTGATGAAAAGCAGAGGCTTAAGGCTGAGAAAGAGAAGTTGGAGCAGCTAATGAAATCAATGAATGCCCAACCCAGTTTCTTGACACACCCTCCTCCAATCCCTGCTGCATTTGCTCCACAAGGCCAAGTCCCTGGAAACAAGTTAATGCCTTTCATGAGTTATCCAGGAGTTGCCATGTGGCAATTCATGCCACCAGCCTCCGTGGA 467 0.4732 GRSDSCAPSSSKACREKLRRDKLNDKFVELGSFLEPGRPPKTDKAAILIDAARMVKQLRGEAQKLKDSNSNIQEKIKELKVEKNELRDEKQRLKAEKEKLEQLMKSMNAQPSFLTHPPPIPAAFAPQGQVPGNKLMPFMSYPGVAMWQFMPPASV 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42707g00001 155 FunFam Transcription factor bHLH34 1 56 - -
Trme42707g00001 155 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 82 IPR036638 GO:0046983
Trme42707g00001 155 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 58 IPR011598 GO:0046983
Trme42707g00001 155 SMART finulus 13 64 IPR011598 GO:0046983
Trme42707g00001 155 PANTHER BHLH TRANSCRIPTION FACTOR 2 155 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Trme42707g00001 155 Coils Coil 48 110 - -
Trme42707g00001 155 Gene3D - 10 86 IPR036638 GO:0046983
Trme42707g00001 155 Pfam Helix-loop-helix DNA-binding domain 11 58 IPR011598 GO:0046983
Trme42707g00001 155 CDD bHLH_AtILR3_like 12 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42707g00001 Trme-Chr42707 269 1022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42707g00001 1 155 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 76.433 1.68e-82 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme42707g00001 HLH 8.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42707g00001 - - twl:119988144 268.47