Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4269g00001 TCAAATTCCATAGTATTTTCTTCTTCTGCTCCCCAAACTAACAATAGTAATAAGCGTTCCAGTAGAACTGACAACGAGGACCCCGATCTTCTTCTACATTGCCTCACTGCCCTCGAAACTCAGTATAGTCTCCCACAAACTTCTTTGGAAATGGACAAGCTTATGCATAATATTCCCCAAGATTCCGTCCCTTGTAAAATCCGTGCCAAGCGTGGCTGTGCCACTCATCCCCGTAGCATTGCTGAACGGGAGAGAAGAACTAGAATAAGTGGCAAGTTGAAGAAATTGCAGGACCTTGTACCTAATATGGATAAGCAAACAAGTTATTCTGACATGCTGGATTTGGCCGTTCAACATATCAAAGGTCTTCAAACTCAAGTTCAGAAGCTTCACGAAGATCTTGAGAATTGCACTTGCGGATGCAAACAAAGTACATAA 438 0.4247 SNSIVFSSSAPQTNNSNKRSSRTDNEDPDLLLHCLTALETQYSLPQTSLEMDKLMHNIPQDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQTQVQKLHEDLENCTCGCKQST 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4269g00001 145 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 123 IPR011598 GO:0046983
Trme4269g00001 145 Pfam Helix-loop-helix DNA-binding domain 78 124 IPR011598 GO:0046983
Trme4269g00001 145 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 138 IPR036638 GO:0046983
Trme4269g00001 145 MobiDBLite consensus disorder prediction 1 27 - -
Trme4269g00001 145 FunFam Transcription factor bHLH130 family 74 143 - -
Trme4269g00001 145 CDD bHLH_AtbHLH_like 78 130 IPR045239 -
Trme4269g00001 145 Gene3D - 74 143 IPR036638 GO:0046983
Trme4269g00001 145 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 139 - -
Trme4269g00001 145 MobiDBLite consensus disorder prediction 1 19 - -
Trme4269g00001 145 SMART finulus 79 129 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4269g00001 Trme-Chr4269 3 2115 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4269g00001 36 143 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 79.091 8.89e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme4269g00001 HLH 2.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4269g00001 - - mtr:11440758 274.633