Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42695g00001 ATGGCGGCAAGTAACCGCACAGCGTTGCAATTCTCGTCTTCACAGACCTTATCCGGAAAAGTTCATCCTCTCGTTATCTTCAACATCTGTGATTGCTATGTCCGTCGTCCTGACCAAGCGGAGCGCGTCATCGGAACACTACTCGGTTCCGTTCTCCCTGACGGAACTGTTGATATCCGTAATTCATACGCCGTTCCTCACAGCGAATCCGCTGATCAG 219 0.5114 MAASNRTALQFSSSQTLSGKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHSESADQ 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42695g00001 73 Gene3D Cytidine Deaminase, domain 2 5 73 - -
Trme42695g00001 73 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 20 73 IPR000555 GO:0005515|GO:0008233|GO:0008237
Trme42695g00001 73 ProSiteProfiles MPN domain profile. 19 73 IPR037518 -
Trme42695g00001 73 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 12 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42695g00001 Trme-Chr42695 657 875 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42695g00001 2 73 Eukaryotic Initiation Factors Gene Family AT2G39990 66.250 1.35e-34 117