Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42694g00001 CCTGATGGAACTCAATTAGCTGTGAAGCAGCTAGAAGGTATTGGTCAAGGGAAGAAAGAGTTCCGAGCTGAAGTTAGCATCATTGGAAGCATTCATCACCTTAATTTAGTAAGGCTCAAAGGTTTTTGTGCAGATGGAACACACAAGCTTCTAGTTTATGAGTTTATGGCTAATAACTCATTGGATAAATGGATATTCAAGAAGAAAAAAGGYGAATTTCTTTTGGATTGGGATACAAGGTTTAACATAGCAGTAGGAACAGCAAAAGGGCTAGCTTATTTACATGAAGAGTGTGACTCAAAGATTGTTCATTGTGACATCAAGCCTGAAAATGTACTCCTTGATGATCATTTCACAGCTAAAGTTTCAGATTTTGGTTTAGCCAAGCTTATGAATAGAGAACAAAGTCATGTTTTTACAACAATGAGAGGAACACGCGGCTACCTTGCACCTGAGTGGATAAAAAAATATGCAATATCAGAGAAAAGTGATGTATACAGCTATGGAATGGTGTTGTTGGAGATTATAGGAGGAAGGACGAATTATGATACTAATGAGAGTTCAGAGAAAAGATATTTTCCTAGTTATGCTTTTAAGATGATGGAAGAAGGGAAAATAAGAGATATACTTGATCCTGAGCTGCAAATTGATGAGCATGATGATAGGGCTCAATGTGCTATAAGGGTTGCATTGTGGTGTATAAAAGAAGACATGTCTATGAGACCTTCAATGACTAAAGTTGTTCAAATGTTGGAAGGTCGTTGTGCTGTTCCTATACCTAGTGAAGGTGGTAACTCTTCTGGTCCATCAGATAGTAATAGTGAAGGTCTATCAGCAGTTCGTCTTTCTGGCCCAAGATAA 861 0.3775 PDGTQLAVKQLEGIGQGKKEFRAEVSIIGSIHHLNLVRLKGFCADGTHKLLVYEFMANNSLDKWIFKKKKGEFLLDWDTRFNIAVGTAKGLAYLHEECDSKIVHCDIKPENVLLDDHFTAKVSDFGLAKLMNREQSHVFTTMRGTRGYLAPEWIKKYAISEKSDVYSYGMVLLEIIGGRTNYDTNESSEKRYFPSYAFKMMEEGKIRDILDPELQIDEHDDRAQCAIRVALWCIKEDMSMRPSMTKVVQMLEGRCAVPIPSEGGNSSGPSDSNSEGLSAVRLSGPR 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42694g00001 286 SUPERFAMILY Protein kinase-like (PK-like) 2 252 IPR011009 -
Trme42694g00001 286 Gene3D Phosphorylase Kinase; domain 1 1 55 - -
Trme42694g00001 286 CDD STKc_IRAK 1 253 - -
Trme42694g00001 286 PIRSF ILK 2 256 - -
Trme42694g00001 286 Gene3D Transferase(Phosphotransferase) domain 1 56 257 - -
Trme42694g00001 286 FunFam S-receptor-like kinase 5 56 260 - -
Trme42694g00001 286 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 3 260 - -
Trme42694g00001 286 MobiDBLite consensus disorder prediction 263 279 - -
Trme42694g00001 286 Pfam Protein kinase domain 3 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme42694g00001 286 MobiDBLite consensus disorder prediction 259 286 - -
Trme42694g00001 286 ProSiteProfiles Protein kinase domain profile. 1 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme42694g00001 286 SMART serkin_6 2 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme42694g00001 286 ProSitePatterns Serine/Threonine protein kinases active-site signature. 102 114 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42694g00001 Trme-Chr42694 1 861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42694g00001 2 263 Receptor kinase-like Gene Family AT5G20050 47.653 8.23e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme42694g00001 Pkinase 6.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42694g00001 - - tpra:123882999 565.074