Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42671g00001 ATGGTCCAATTTGAGCAGTATGTTGCGCAAGGAAAAGTTCTTAACCACTATGCAAATATCCTTGACCTACTAATGCAGTTGAGACGGTGCTGCAACCATCCATTTTTGGTCATGAGTGGAAGTGATCCTGCGAAATATGCAGACTTGAGCAGACTTGCAAGAAAATTCCTTGAATCTCATACTGAATCATCTGATATGTGCTGCGAAAGCGGTGCACAGCAAAATGCCGAATTGAACAAACTTGCTAGTCTTGCTTGTACATTTCTACAGAATTCTGTTTCTGCTTCACACTCTGTCCAATCTCGTGGATACATTGACGAGGTTTTGGGGCATATTCAAAAGGGTGAAACTGTAGAATGCTCTATATGTATGGAATCACCAGATGATCCTGTTTTTACACCATGTGCACATCAGTTTTGTAGAGAATGCCTATTCAATTGCTGGGGTACCTCAATGGGTGGTAAATGTCCAATCTGTCGTCAATCACTAAAGAAAAGTGATCTTATTGCACTTCCAACAGAAAGCCCATTCAAGGTTGATATTGAGAACAATCTGACGGAGTCTTCAAAGCTTTCAAAGCTCTTCGATTTCTTAGAACAAATTCAGAAATTTTCTGATGAAAAAA 625 0.3984 MVQFEQYVAQGKVLNHYANILDLLMQLRRCCNHPFLVMSGSDPAKYADLSRLARKFLESHTESSDMCCESGAQQNAELNKLASLACTFLQNSVSASHSVQSRGYIDEVLGHIQKGETVECSICMESPDDPVFTPCAHQFCRECLFNCWGTSMGGKCPICRQSLKKSDLIALPTESPFKVDIENNLTESSKLSKLFDFLEQIQKFSDEK 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42671g00001 208 Gene3D - 3 109 - -
Trme42671g00001 208 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 2 203 - -
Trme42671g00001 208 Pfam Zinc finger, C3HC4 type (RING finger) 118 165 - -
Trme42671g00001 208 SUPERFAMILY RING/U-box 115 169 - -
Trme42671g00001 208 ProSiteProfiles Zinc finger RING-type profile. 120 160 IPR001841 -
Trme42671g00001 208 SMART ring_2 120 159 IPR001841 -
Trme42671g00001 208 ProSitePatterns Zinc finger RING-type signature. 135 144 IPR017907 -
Trme42671g00001 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 204 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42671g00001 2 203 RAD5 or RAD16-like Gene Family AT5G43530 48.515 2.60e-59 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42671g00001 K15505 - gmx:100806677 298.516