Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42661g00001 ATGGGAATAACTAGAACTGAGGTTGCAAAAGAACTTCAGATATGGGAGCTTGCAGATGACAATTGTAGTACTATCGTTTCAGCTATCACTGAGGGTCGCACTATTTATAATAACATGAAAGTATTTATAAGGTACTTGATATCATCAAATGTTGAGGAAGTAATATCCATATTCTTGACAGCTGCTTTGGGGATACCTGAATGTATGATACCAGTGCAACTTCTGTGGGTGAATTTGGTCACCGATGGTCCACCYGCAACAGTTCTTGGTTTCAACCCTGCGGATGTTGATATTATGCATAAGCCACCTCGAAAAAGTGACGATGCTCTTTTGTAG 336 0.3988 MGITRTEVAKELQIWELADDNCSTIVSAITEGRTIYNNMKVFIRYLISSNVEEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATVLGFNPADVDIMHKPPRKSDDALL 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42661g00001 111 SUPERFAMILY Calcium ATPase, transmembrane domain M 7 110 IPR023298 -
Trme42661g00001 111 PANTHER CALCIUM-TRANSPORTING ATPASE 3 110 - -
Trme42661g00001 111 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 3 111 - -
Trme42661g00001 111 Gene3D - 4 111 - -
Trme42661g00001 111 Pfam Cation transporting ATPase, C-terminus 67 110 IPR006068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42661g00001 Trme-Chr42661 198 868 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42661g00001 1 111 Primary Pumps ATPases(2) AT4G00900 83.784 2.20e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42661g00001 K01537 - qsu:111983248 188.348