Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4265g00001 TTCTTTGAACAATGTCCTTTATTTGTTTATAGGGGACAAGCAGAGAAAGAATTCAGGGTTGAAGTCGACGCTATAGGCCACGTCAGACATAAACATCTGGTGCGCTTACTTGGATTTTGCATAGAAGGAGTTCATAGGTTGCTTGTGTATGAGTATGTGAACAATGGTAACTTAGAACAATGGTTACATGGTGCAATGAGACAACATGGAGTACTTACGTGGGAAGCTCGCATGAAAGTTATTCTAGGGACAGCGAAAGCGCTTGCTTACTTACACGAAGCAATAGAACCAAAAGTTGTTCACCGGGATATAAAGTCGAGCAACATTTTAATTGATAGCGAGTTCAATGCAAAGGTTTCTGATTTTGGTTTAGCCAAACTTTTGGATTCAAGCGAAAGTCACATAACTACCAGAGTAATGGGAACATTTGGTTATGTTGCACCCGAATATGCTAATACCGGCTTGTTAAACGAGAAGAGTGACATTTACAGTTTTGGTGTTCTCCTACTAGAAGCGATCACTGGAAGGGACCCTGTAGACTATACGCGTCCTGCCAACGAGGTGAATCTTGTTGAGTGGATGAAGATGATGGTGGGGGCAAAGAGGGTCGAGGAAGTTGTGGACTCAAGCCTTGAAGCAAAACCACCAACTCGTGCCTTAAAGCGTGCCCTTCTTGTTGCGTTTAGGTGTGTTGATCCTGATTCTGAGAAGAGACCCAAAATGAGTCAGGTTGTAAGGATGCTTGAAGCTGATGAATATCCATTCCGAGAGGATCGAAGGAATAGAAGGAGCCGCACCGCCAGCATGGAAATTGAATCTCTAAAGGATATCTCCGGTCCTTCAGATATCGATAAGACGACAAAAGGTTCTGAAGAATCTGCACTTGAGAACCACATGACTTAA 903 0.4319 FFEQCPLFVYRGQAEKEFRVEVDAIGHVRHKHLVRLLGFCIEGVHRLLVYEYVNNGNLEQWLHGAMRQHGVLTWEARMKVILGTAKALAYLHEAIEPKVVHRDIKSSNILIDSEFNAKVSDFGLAKLLDSSESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYTRPANEVNLVEWMKMMVGAKRVEEVVDSSLEAKPPTRALKRALLVAFRCVDPDSEKRPKMSQVVRMLEADEYPFREDRRNRRSRTASMEIESLKDISGPSDIDKTTKGSEESALENHMT 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4265g00001 300 FunFam Putative receptor-like serine/threonine-protein kinase 53 263 - -
Trme4265g00001 300 Gene3D Phosphorylase Kinase; domain 1 7 53 - -
Trme4265g00001 300 Gene3D Transferase(Phosphotransferase) domain 1 54 266 - -
Trme4265g00001 300 MobiDBLite consensus disorder prediction 258 300 - -
Trme4265g00001 300 PANTHER OS01G0323000 PROTEIN 8 270 - -
Trme4265g00001 300 CDD STKc_IRAK 15 249 - -
Trme4265g00001 300 SUPERFAMILY Protein kinase-like (PK-like) 16 250 IPR011009 -
Trme4265g00001 300 ProSiteProfiles Protein kinase domain profile. 1 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4265g00001 300 ProSitePatterns Serine/Threonine protein kinases active-site signature. 99 111 IPR008271 GO:0004672|GO:0006468
Trme4265g00001 300 SMART serkin_6 1 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4265g00001 300 MobiDBLite consensus disorder prediction 277 300 - -
Trme4265g00001 300 Pfam Protein kinase domain 14 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4265g00001 Trme-Chr4265 32 2249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4265g00001 7 251 Trihelix Transcription Factor Family AT1G70460 51.600 6.33e-81 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trme4265g00001 Pkinase 3.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4265g00001 - - qsa:O6P43_021073 505.368