Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42592g00001 ATGCAAGCATTTTGTTCTGCTATAGCGCGAAAGGCTCTTAGAGCGCTAAAAGCACTTGTTAAGATACAAGCTCTTGTTAGAGGATACCTAGTTCGAAAAAGGGTTGCTGCAACACTTCACAGTATGCAAGCTCTCATGAGAGCTCAAGCTGTTATCCGGTCAAGGCGAGCTCGTAATTCCATTGACAAGGAGAACGTATATCAGTCAGAAATCCTTGGGCGAAAACATGTGCAAATATTTGATGAAACTAGAAATGAACAACACAATAAATGGCTTCCAAATTCGTCAAGTAAATTTGCTCCGAACCCGAAAATTGTTGTGGTTGATCCTCACAGGTCTCGTTCGAGATCTACAATGTCTGAATCTGGAGATGATCTGCATGATTACTATGAAGCAACATCATCCTCTCTTCCTTATCCAATTCCACGTCGAATCTCAGTTCATGAATGCCAAAATTCTCAAGATTTTGATTGGTCCGTCGATAATGTTAACAATGAAC 499 0.4068 MQAFCSAIARKALRALKALVKIQALVRGYLVRKRVAATLHSMQALMRAQAVIRSRRARNSIDKENVYQSEILGRKHVQIFDETRNEQHNKWLPNSSSKFAPNPKIVVVDPHRSRSRSTMSESGDDLHDYYEATSSSLPYPIPRRISVHECQNSQDFDWSVDNVNNE 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42592g00001 166 SMART iq_5 14 36 IPR000048 GO:0005515
Trme42592g00001 166 MobiDBLite consensus disorder prediction 110 128 - -
Trme42592g00001 166 Pfam IQ calmodulin-binding motif 17 34 IPR000048 GO:0005515
Trme42592g00001 166 ProSiteProfiles IQ motif profile. 17 44 IPR000048 GO:0005515
Trme42592g00001 166 MobiDBLite consensus disorder prediction 110 131 - -
Trme42592g00001 166 Gene3D - 13 66 - -
Trme42592g00001 166 PANTHER IQ-DOMAIN 5-RELATED 3 98 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42592g00001 4 164 IQD Protein Family AT3G16490 40.571 4.41e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42592g00001 - - psat:127083621 208.764