Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4258g00001 ATGTACCATGGCCAAATGAATGGAAAATCACGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAAATGCAAATTATGGTGGCTACAATTGCCTTTGGCATGGGAATAGATAAACCTAATATAAGAAAAGTGATTCACTATGGCTGCCCTAAGAATCTAGAGTCCTATTACCAGGAAAGTGGGCGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGCGATTTTTATGCTGCAGACTTAAAATCGGAAAACCAAAAAAAAGCTGTTATGGAATCATTGCTGGCTGCTCAACGCTATTGTTTGTCGGCAACTTGCAGAAGAAAGTTCTTGCTTGAACACTTCGGGGAAAAAATTGCAGCTGATAGATGTGGAAATTGTGATAACTGCACAGTCTCGAAGCAGGAGCGTGACCTGTCAAGAGAAGCATTTCTTCTAATGGCTTGCATTCATTCATGCAAGGGCAGATGGGGCCTTAATATGCCGGTTGACATCCTTCGCGGTTCTCGA 540 0.4185 MYHGQMNGKSREESHRLFVRDEMQIMVATIAFGMGIDKPNIRKVIHYGCPKNLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYAADLKSENQKKAVMESLLAAQRYCLSATCRRKFLLEHFGEKIAADRCGNCDNCTVSKQERDLSREAFLLMACIHSCKGRWGLNMPVDILRGSR 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4258g00001 180 Pfam Helicase conserved C-terminal domain 2 66 IPR001650 -
Trme4258g00001 180 Pfam RecQ zinc-binding 92 141 IPR032284 -
Trme4258g00001 180 Gene3D - 1 76 IPR027417 -
Trme4258g00001 180 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 112 IPR001650 -
Trme4258g00001 180 SMART helicmild6 1 67 IPR001650 -
Trme4258g00001 180 Gene3D - 81 180 IPR036388 -
Trme4258g00001 180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 179 IPR027417 -
Trme4258g00001 180 PANTHER DNA HELICASE RECQ FAMILY MEMBER 1 153 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4258g00001 3 80 Eukaryotic Initiation Factors Gene Family AT3G13920 30.769 1.05e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4258g00001 K03654 - gmx:100797777 340.887