Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42576g00001 GGTATATTGAGCAACGGAACGGAAATTGCAGTGAAGAGGCTATCAAAATATTCTGGACAAGGCATAGAAGAGTTTAAAAATGAGGTGGTTTTGATTTCAAAACTCCAACACAGAAATCTTGTAAGGATATTAGGTTGTTGCGTTCAAGGAGAAGAGAAGATGTTAATCTATGAGTATTTGCCTAACAAAAGCTTAAACTTTTTCATTTTTGATAAATCTAAAAGTTCAGAACTAGACTGGAGAAAGCGGTTTGATATTATCTGCGGCATTGCTAGAGGGATCTTATATCTTCACCATGACTCACGATTAAGAATCATTCATAGAGACCTAAAGGCTAGCAATGTATTGTTGGACACGGCATTGAACCCAAAAATTGCAGATTTTGGTATGGCTAGAATGTTTGGTGGAGATCAAATTGAAGCAACTACAAAACGTGTCGTTGGAACCTAG 450 0.3689 GILSNGTEIAVKRLSKYSGQGIEEFKNEVVLISKLQHRNLVRILGCCVQGEEKMLIYEYLPNKSLNFFIFDKSKSSELDWRKRFDIICGIARGILYLHHDSRLRIIHRDLKASNVLLDTALNPKIADFGMARMFGGDQIEATTKRVVGT 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42576g00001 149 ProSiteProfiles Protein kinase domain profile. 1 149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme42576g00001 149 Gene3D Transferase(Phosphotransferase) domain 1 60 149 - -
Trme42576g00001 149 FunFam Uncharacterized protein 1 59 - -
Trme42576g00001 149 Gene3D Phosphorylase Kinase; domain 1 1 59 - -
Trme42576g00001 149 SMART serkin_6 3 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme42576g00001 149 SUPERFAMILY Protein kinase-like (PK-like) 2 149 IPR011009 -
Trme42576g00001 149 ProSitePatterns Serine/Threonine protein kinases active-site signature. 105 117 IPR008271 GO:0004672|GO:0006468
Trme42576g00001 149 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 60 149 - -
Trme42576g00001 149 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 149 - -
Trme42576g00001 149 Pfam Protein tyrosine and serine/threonine kinase 5 135 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42576g00001 Trme-Chr42576 204 776 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42576g00001 1 149 Receptor kinase-like Gene Family AT4G11530 71.141 1.39e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme42576g00001 PK_Tyr_Ser-Thr 2.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42576g00001 - - gmx:100812814 264.233