Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4254g00001 ATGTTACTTCTTTCACCATCTTTGCAAAATGAGAGCTTATTAAGGGTTACTTATGGAGATCTACATGATGCAACCAATGGATTTTCTTCATCCAATTTGGTAGGAATGGGAAGCTTTAGTTCTGTTTATAAAGGGCATCTTCTTCATTTTGATAGAGTTATTGCTATAAAAGTGTTGAATCTTGAAACACGTGGTGCTGCAAAGAGTTTCATGGCTGAATGTAAAGCTCTAGGAAAGATGAAGCATCGGAATCTTGTAAAGATCATAACTTGTTGTTCAAGTGTTGATTATAAGGGTGAAGATTTCAAGGCTATTGTTTTTGAGTTCATGTCTAACGGGAGTTTGGAAAATTTGTTGTACAACAGTGAAGATGAGTCTAAAAATCTTAGTCTAAACTTCACACAAAGGGTAGACATTGCTCTTGATGTAGCTCATGCATTGGATTATCTTCATCATAACATAGAGCAAGTTGTAGTTCATTGTGATGTTAAACCAAGCAATGTTCTTCTTGATGATACCCTTGTTGCCCACTTAGGAGACTTTGGCATAGCTAAACTCATTCATGGAGCCATGGAGAATTCCAGTAAAGCCCAAGTCAATTCTTCCGCAATTAAGGGAACTATCGGATATGTTCCTCCAG 640 0.3703 MLLLSPSLQNESLLRVTYGDLHDATNGFSSSNLVGMGSFSSVYKGHLLHFDRVIAIKVLNLETRGAAKSFMAECKALGKMKHRNLVKIITCCSSVDYKGEDFKAIVFEFMSNGSLENLLYNSEDESKNLSLNFTQRVDIALDVAHALDYLHHNIEQVVVHCDVKPSNVLLDDTLVAHLGDFGIAKLIHGAMENSSKAQVNSSAIKGTIGYVPP 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4254g00001 213 ProSitePatterns Serine/Threonine protein kinases active-site signature. 158 170 IPR008271 GO:0004672|GO:0006468
Trme4254g00001 213 Pfam Protein kinase domain 30 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4254g00001 213 Gene3D Phosphorylase Kinase; domain 1 3 109 - -
Trme4254g00001 213 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Trme4254g00001 213 SUPERFAMILY Protein kinase-like (PK-like) 8 213 IPR011009 -
Trme4254g00001 213 FunFam LRR receptor-like serine/threonine-protein kinase EFR 3 109 - -
Trme4254g00001 213 Gene3D Transferase(Phosphotransferase) domain 1 110 213 - -
Trme4254g00001 213 PANTHER OS04G0122200 PROTEIN 13 212 - -
Trme4254g00001 213 ProSiteProfiles Protein kinase domain profile. 28 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4254g00001 213 SMART serkin_6 28 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4254g00001 Trme-Chr4254 574 1213 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4254g00001 15 213 Receptor kinase-like Gene Family AT3G47570 52.475 2.80e-70 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trme4254g00001 Pkinase 2.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4254g00001 - - mtr:11438431 318.161