Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42536g00001 ATGACTGTTTCCTTCCCCTGCATGAACAGCTTTCCTCTTGATGAGCAAATGAACATGAAATCAGTAGTCGATTATTTTCAAGAAATGTATGATTATACAATCAAATATACTCATTTACCTTGCCTTCAAGTAGGAAGTCAAAGGAAGGTCAACTATTTGCCCATGGAGGCATGCAAGATAGTTAGGGGTCAGAGATATACAAAAGGGCTGAATGAAAAGCAAATAACTTCACTGTTGAAGTCCTCATGCCAGAGACCCCGTGAACAGGAGACAGACATTTTACAGGATCCAAGATGGATCTTAACGGCATCTGGGGGTGGTGGAAGCGCGACAGAGGACAGAAGTTGGAGCGCCTTGATAGAGGGTGTTGTATCTGCAAGCGCTTAG 387 0.4341 MTVSFPCMNSFPLDEQMNMKSVVDYFQEMYDYTIKYTHLPCLQVGSQRKVNYLPMEACKIVRGQRYTKGLNEKQITSLLKSSCQRPREQETDILQDPRWILTASGGGGSATEDRSWSALIEGVVSASA 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42536g00001 128 ProSiteProfiles PAZ domain profile. 11 62 IPR003100 GO:0005515
Trme42536g00001 128 SUPERFAMILY PAZ domain 10 95 IPR036085 GO:0005515
Trme42536g00001 128 Pfam PAZ domain 10 78 IPR003100 GO:0005515
Trme42536g00001 128 Gene3D paz domain 2 65 - -
Trme42536g00001 128 CDD PAZ_argonaute_like 10 61 - -
Trme42536g00001 128 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 9 94 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42536g00001 11 95 Eukaryotic Initiation Factors Gene Family AT5G43810 72.941 7.18e-41 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42536g00001 K11593 - gmx:100813485 165.622