Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme425296g00001 | ATGTGTAAGGGAGTCCAATACTTGAATGAAATCAAGGATTCTGTTGTTGCTGGATTCCAGTGGGCATCAAAAGAAGGTGCTTTGTCTGAAGAAAACATGAGAGGCATATGCTTTGAAGTATGTGATGTTGTCCTCCACACAGATGCTATCCACAGAGGAGGTGGTCAGATCATTCCTACTGCCAGGAGGGTCTTCTATGCCTCACAGCTGACAGCCAAACCCAGGCTTCTTGAGCCTGTTTACATGGTGGAAATCCAAGCTCCTGAGCAAGCTCTTGG | 278 | 0.4676 | MCKGVQYLNEIKDSVVAGFQWASKEGALSEENMRGICFEVCDVVLHTDAIHRGGGQIIPTARRVFYASQLTAKPRLLEPVYMVEIQAPEQALG | 93 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme425296g00001 | 93 | Gene3D | - | 1 | 73 | IPR014721 | - | |
| Trme425296g00001 | 93 | Pfam | Elongation factor G, domain IV | 1 | 73 | IPR005517 | GO:0005525 | |
| Trme425296g00001 | 93 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 2 | 77 | IPR020568 | - | |
| Trme425296g00001 | 93 | CDD | aeEF2_snRNP_like_IV | 1 | 81 | - | - | |
| Trme425296g00001 | 93 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 2 | 93 | - | - | |
| Trme425296g00001 | 93 | SMART | EFG_IV_2 | 1 | 73 | IPR005517 | GO:0005525 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme425296g00001 | Trme-Chr425296 | 1 | 278 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme425296g00001 | 1 | 93 | Eukaryotic Initiation Factors Gene Family | AT1G56070 | 92.473 | 4.58e-57 | 186 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme425296g00001 | K03234 | - | nnu:104608102 | 186.808 |