Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42518g00001 ATGGATGTTGGTCCAGGTGCCTCAATAGTTATGTTTCATGGAGACCTTCCATATTCTTCGAAAGACATTATTAAGAAACTAGAGACTTTGAATGAGGAACACATAATAGGAGTAGGGGGATTTGGAACTGTTTACAAGCTTGCAATGGATGACGGGAATGTATTTGCGTTGAAAAGGATCGTAAAGTTGAATGAAGGCTTTGATCGTTTTTTTGAGAGGGAGCTTGCAATTCTTGGTAGCATCAAGCATCGTTATTTAGTTAATTTACGTGGATATTGCAATTCACCTACATCAAAGTTGTTAATATATGACTACCTACCTGGTGGTAGTCTCGATGAAGTTCTTCATG 349 0.3811 MDVGPGASIVMFHGDLPYSSKDIIKKLETLNEEHIIGVGGFGTVYKLAMDDGNVFALKRIVKLNEGFDRFFERELAILGSIKHRYLVNLRGYCNSPTSKLLIYDYLPGGSLDEVLH 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42518g00001 116 Gene3D Phosphorylase Kinase; domain 1 5 105 - -
Trme42518g00001 116 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 18 116 - -
Trme42518g00001 116 SUPERFAMILY Protein kinase-like (PK-like) 12 116 IPR011009 -
Trme42518g00001 116 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 4 105 - -
Trme42518g00001 116 ProSiteProfiles Protein kinase domain profile. 30 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme42518g00001 116 Coils Coil 115 116 - -
Trme42518g00001 116 Pfam Protein kinase domain 32 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme42518g00001 116 ProSitePatterns Protein kinases ATP-binding region signature. 36 62 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42518g00001 Trme-Chr42518 40 643 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42518g00001 1 116 Receptor kinase-like Gene Family AT2G35620 92.241 2.48e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Trme42518g00001 Pkinase 3.5e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42518g00001 - - tpra:123907561 237.654