Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme425087g00001 ATGGGGAGAGGAAGAGTGCAATTGAAGAGGATAGAAAACAAGATCAATAGACAAGTAACTTTTTCAAAGAGAAGGTCTGGTTTGTTGAAGAAAGCACATGAGATCTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATAGTTTTCTCTACTAAAGGCAAGCTTTATGATTACTCTAGTGATCCATG 185 0.3784 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLYDYSSDP 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme425087g00001 61 FunFam MADS-box transcription factor MADS-MC 13 61 - -
Trme425087g00001 61 Gene3D - 13 61 IPR036879 GO:0003677|GO:0046983
Trme425087g00001 61 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trme425087g00001 61 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trme425087g00001 61 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trme425087g00001 61 CDD MADS_MEF2_like 2 59 IPR033896 GO:0000977|GO:0045944
Trme425087g00001 61 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trme425087g00001 61 SUPERFAMILY SRF-like 2 60 IPR036879 GO:0003677|GO:0046983
Trme425087g00001 61 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trme425087g00001 61 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 59 - -
Trme425087g00001 61 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trme425087g00001 61 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme425087g00001 Trme-Chr425087 24 208 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme425087g00001 1 60 MADS-box Gene Family AT1G26310 86.667 1.34e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme425087g00001 SRF-TF 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme425087g00001 K09264 - gmx:100816836 119.012