Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42491g00001 GAAGCAAATTCTGAAGCAAATAATGATAATGTTTGTGGTATTTGTGGTTTTGGAGGCGACATAGTACTATGCGATCGATGTCCTTCTTCATTCCACCTCAGTTGTTTAGGTCTCGATCGAGTTCCGGATGGTGATTGGTTCTGTCCAACTTGTTGTTGCAAAATATGCTATGGACCCAAATGCAAACAGGAATGTGCAGATCAAACTGATAACAATATTCTTGCTTGTGTTCAATGTGAGCAAAAATTTCACTCTGGGTGCGTAAAGGCTATAGGAGGATTTGGACCTACTGAAATGGAGAGCAATGCGAATAAGAAGACTTGGTTTTGCAGTGTAGTTTGTGGGAACATGTTCTTATGTCTAAAGAAGCTGTTAGGGAAACCAATTACGATTGCAGATAATATAACATGGACATTGTTGAAGAATAATGCGAGTAGTGATTACGATTATGATGGTGGAAATTTTACTTCTTATGACTTTAGTCTAAATAAGAGAAAGTTGAATGCGGCTCTTGGTGTATTGTATGAGAGTTTTAACCCAAGCATTGATGCTTTCTCCGGAAGAGAGTTGATTAAAGATGTTGTATTTAGTAGAGACTCAAAACATAATCGTCTGAACTTTCGTGGTTTCTATAACGTGATTTTAGAGAAAAAGGGTGCAGTGGCTTCAGTGGCAACTATAAGGATTTATGGTCCAAAGGTTGCTGAGATAGTTTTCGTGGCTACCAAGGAACAATATCGAAAACAAGGATTGTGTCGTTTGTTGATGGACGAGCTTGAGAAGCAGTTGATTCGCTTAGGAGTTGGGAGCTTTGTTTTGCATTCATCTGAGCATGCTATAAACACTTGGACAAAATCATTTGGTTTTAATAGGATGAGTGGTAAAGAAAAGTGTCAATTTATTGACAATACTTTCTTAGAATTTCAGAACAGTATCATGTGCCTTAAACGACTGAATAGACCTATATGGCCTTACATTGCTCGATGA 987 0.3799 EANSEANNDNVCGICGFGGDIVLCDRCPSSFHLSCLGLDRVPDGDWFCPTCCCKICYGPKCKQECADQTDNNILACVQCEQKFHSGCVKAIGGFGPTEMESNANKKTWFCSVVCGNMFLCLKKLLGKPITIADNITWTLLKNNASSDYDYDGGNFTSYDFSLNKRKLNAALGVLYESFNPSIDAFSGRELIKDVVFSRDSKHNRLNFRGFYNVILEKKGAVASVATIRIYGPKVAEIVFVATKEQYRKQGLCRLLMDELEKQLIRLGVGSFVLHSSEHAINTWTKSFGFNRMSGKEKCQFIDNTFLEFQNSIMCLKRLNRPIWPYIAR 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42491g00001 328 Pfam Acetyltransferase (GNAT) family 211 289 IPR000182 GO:0016747
Trme42491g00001 328 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 211 305 IPR016181 -
Trme42491g00001 328 CDD NAT_SF 213 274 - -
Trme42491g00001 328 ProSiteProfiles Zinc finger PHD-type profile. 9 54 IPR019787 -
Trme42491g00001 328 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 173 321 IPR000182 GO:0016747
Trme42491g00001 328 Gene3D - 166 304 - -
Trme42491g00001 328 PANTHER PHD FINGER PROTEIN 12 6 319 IPR042163 GO:0003714|GO:0045892
Trme42491g00001 328 Pfam PHD-finger 11 53 IPR019787 -
Trme42491g00001 328 SUPERFAMILY FYVE/PHD zinc finger 3 62 IPR011011 -
Trme42491g00001 328 SMART PHD_3 11 52 IPR001965 -
Trme42491g00001 328 SMART PHD_3 60 114 IPR001965 -
Trme42491g00001 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 71 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42491g00001 Trme-Chr42491 38 1024 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42491g00001 5 261 PHD Transcription Factor Family AT5G58610 41.085 7.00e-63 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme42491g00001 Acetyltransf_1 5.8e-10 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42491g00001 - - tpra:123894286 680.248