Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42434g00001 ACTCCAGTTAATTTGGACACGTTATATTATGCCGAGTACAATAATCATGGACCCGGAGCTGGAGTAGAAAACCGCGTAAAATGGTCAGGGTACCATGTTTTGACTGATGCTAGCCAGGCTAGTAACTTCACTGTGGCGCAATTGATTTCGGGGAATCAATGGTTACCTGCAACAAGTGTCCCATTCACCCCTGGACTTGGGAATTAG 207 0.4589 TPVNLDTLYYAEYNNHGPGAGVENRVKWSGYHVLTDASQASNFTVAQLISGNQWLPATSVPFTPGLGN 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42434g00001 68 PANTHER PECTINESTERASE 5 58 - -
Trme42434g00001 68 SUPERFAMILY Pectin lyase-like 3 65 IPR011050 -
Trme42434g00001 68 Gene3D - 1 68 IPR012334 -
Trme42434g00001 68 Pfam Pectinesterase 3 52 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42434g00001 Trme-Chr42434 3 209 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42434g00001 5 66 Carbohydrate Esterase AT3G43270 62.903 1.21e-23 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42434g00001 K01051 - gmx:100777500 107.457