Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42407g00001 AATGAAAGTGCTGATATCAAGAATATTGTTGAACAAGTCACCCGTTTGCTAGATAGGACACAGTTATTTGTTGCTGAACATCCAGTGGGTGTAGAATCTCGTGTGCAAGCTGCAACTAAGCTATTAAACATCCAAAATTCAGAAGATGTTCTACTTTTGGGGATCTGGGGAATGGGGGGTACAGGTAAAACAACCATTGCCAAAGCCATTTATAATCAAATTGGAAACAACTTTGAGGGAAGGAGTTTCATTTTGAATATAAGAGAATCTTGGGAGAAAGATAGTAATCTAGTTTCTCTACAGCAACAGGTACTCTCTGATGTTTACACAACTATGACATTCAGGATACGAGATATAGAATCAGGGAAAATTAAATTGAAGGAAAGACTTGCCCGGAAAAGGGTACTTGTTGTGCTTGATGATGTGAATGAAGAAGACCAAGTAAAAGCTTTGTGTGGAAACCGTGAATGGTTTGGTCCTGGAAGTAGACTAATAATCACAACAAGAGATAAACATCTTCTTAGATCGTGTGCAGTTGATCGAATACATGAAATAAACGAAATGGACGATAGAGAATCTCTTGAGCTATTCTGTTGGCATGCCTTCAAGCAACCAAGTCCAATAGAAGAATTTGCGAAACATTCAACAGGTGTGATTGCTTATTCTGGGAGATTGCCATTAGCACTTGAAGTCCTTGGTGCCTATTTGTCTGACTGTGAAATAACAGAGTGGCAGAAAGTTTTGGAGAAACTCAAAT 757 0.3857 NESADIKNIVEQVTRLLDRTQLFVAEHPVGVESRVQAATKLLNIQNSEDVLLLGIWGMGGTGKTTIAKAIYNQIGNNFEGRSFILNIRESWEKDSNLVSLQQQVLSDVYTTMTFRIRDIESGKIKLKERLARKRVLVVLDDVNEEDQVKALCGNREWFGPGSRLIITTRDKHLLRSCAVDRIHEINEMDDRESLELFCWHAFKQPSPIEEFAKHSTGVIAYSGRLPLALEVLGAYLSDCEITEWQKVLEKLK 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42407g00001 252 Pfam NB-ARC domain 34 252 IPR002182 GO:0043531
Trme42407g00001 252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 251 IPR027417 -
Trme42407g00001 252 SMART AAA_5 49 189 IPR003593 GO:0016887
Trme42407g00001 252 Gene3D - 9 183 IPR027417 -
Trme42407g00001 252 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 252 IPR044974 GO:0006952
Trme42407g00001 252 PRINTS Disease resistance protein signature 52 67 - -
Trme42407g00001 252 PRINTS Disease resistance protein signature 222 236 - -
Trme42407g00001 252 PRINTS Disease resistance protein signature 129 143 - -
Trme42407g00001 252 Gene3D - 187 252 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42407g00001 Trme-Chr42407 263 1019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42407g00001 29 236 WRKY Transcription Factor Family AT5G45050 34.434 1.75e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42407g00001 - - mtr:11411578 402.905