Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme42368g00002 GCTCCGGCGAGTCCTGGCGGTGGTAGCCACGAAAGCGGCGAACACAGTCCTCGTTCTAACATCCGTGAACAGGATAGGTTTCTTCCAATCGCTAACATCAGTCGCATCATGAAAAAAGCTCTTCCTGCTAATGGCAAAATTGCTAAAGATGCTAAAGAAACTGTTCAGGAATGTGTTTCTGAGTTCATCAGCTTCATTACCAGCGAGTAG 210 0.4714 APASPGGGSHESGEHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme42368g00002 69 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 69 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trme42368g00002 69 SUPERFAMILY Histone-fold 17 69 IPR009072 GO:0046982
Trme42368g00002 69 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 69 IPR003958 -
Trme42368g00002 69 MobiDBLite consensus disorder prediction 1 25 - -
Trme42368g00002 69 Gene3D Histone, subunit A 13 69 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme42368g00002 Trme-Chr42368 816 1025 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme42368g00002 4 69 CCAAT-HAP3 Transcription Factor Family AT2G37060 84.058 6.94e-34 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trme42368g00002 CBFD_NFYB_HMF 5.6e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme42368g00002 K08065 - cpap:110809897 129.028