Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme423636g00001 ATGCACCACCTTACCGGCCACCGTAACATTGTTGAACTCAAAGGTGCTTATGAGGATAAACACTCCGTTAACCTTGTAATGGAGCTTTGTGCCGGCGGTGAGCTTTTTGATCGGATTATTACTAAAGGACATTACTCTGAACGTGCTGCTGCTAACCTTTGCCGTCAGATTGTTACGGTGGTTCATAACTGTCATACTATGGGAGTTATGCATAGAGACTTGAAGCCTGAGAATTTCTTGTTCCTTGGTAAAGATGAGAATTCGCCTCTTAA 272 0.4338 MHHLTGHRNIVELKGAYEDKHSVNLVMELCAGGELFDRIITKGHYSERAAANLCRQIVTVVHNCHTMGVMHRDLKPENFLFLGKDENSPL 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme423636g00001 90 Pfam Protein kinase domain 2 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme423636g00001 90 SUPERFAMILY Protein kinase-like (PK-like) 2 85 IPR011009 -
Trme423636g00001 90 Gene3D Phosphorylase Kinase; domain 1 12 29 - -
Trme423636g00001 90 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 90 - -
Trme423636g00001 90 ProSitePatterns Serine/Threonine protein kinases active-site signature. 69 81 IPR008271 GO:0004672|GO:0006468
Trme423636g00001 90 Gene3D Transferase(Phosphotransferase) domain 1 1 82 - -
Trme423636g00001 90 ProSiteProfiles Protein kinase domain profile. 1 90 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme423636g00001 Trme-Chr423636 1 272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme423636g00001 1 90 EF-hand Containing Proteins AT4G23650 85.556 1.87e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme423636g00001 Pkinase 1.4e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme423636g00001 K13412 - egr:104443940 182.57