Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4230g00001 ATGGAGTGCAACAAGGATGAGGCTTTGAGGGCGAAACAAATTGCTGAAAATAGAATGCAAAGTGGCGACTTTGTAGGGGCACTGAAGTTTGCTACAAAAGCTCAACGATTGTTTCCTGAGATCCAGAACATTACTCAGATCCTTACTGTCTGCGAGGTTCACTGTGTTGCACAGAACAAACTCTCTACGTCTGATATGGACTGGTATGGAATACTTCTGACTGATAAATTTACCGAAGAAGCAACAATAAAGAAACAGTATAAAAAGCTTGCACTGCTACTTCATCCTGATAAAAATAGATCCGCTGGGGCAGAGGCTGCTTTCAAGTTGATTGTGGAAGCTAACAGGGTATTGAGTGACCCAACAAAGCGTTCTTTATATAACGCGAAGATTAGCCGCCTTGTTGGAATTACAGCATCACAGGTTCCATCCCATCACACAGATAGGAGTTATTTTGGGGTGAAAGTTGATGAAAATGCTAGAAATTACCATAATAGTTTTCATTCGCACTCCCATACTCATAATTCAAATCAGCAGGATGAACGGCCTACATTTTGGACATCATGCCAACACTGTAATACTAAGTACCAGTACTACAAATCCATTGTAAATGCCACCGTGCATTGTCAACAATGTTCTAAACCCTTTAAAGCCCGTGATATAGGGTTCTATGCACCAACAGAACATACATCACCATCATTTAACAGTCATAAATATCCTCCAAACCATGTGCCNCCAAAAGAAGCATCGAAAAGTAATGGCAGAAAACCTTATGGTAAAGGACCGGAGGAAAAATTTGTGCCTTCTTGTCCTGTATCTATGGCAAAATGTAGTGCTGAAAATGGTGCCTCTTGTAAAGTTCGGAAGAGTAAGGACGGCCATGGGGCTGCAGGAGTGACAAAGGCTGGTGCTGGAACATCCAATGGTGCTACATCGAAAGCCAAGCAATCACAAATCCCAACAAATGTTGGAAGTAAGAGAGCAAGGCAGCCAGCATCAGCAGAGTTTGAGAGTGCCTCTAAAAGGCCACAACAAGATAAATCATTCAAGACCATTAAAGTGGAGAAACAAGAAGTACCTGGAAATGGTGGGTTCAATAACACAAATCCATCTAGTTTCACTGCTGATGTGGTTGGTCAGAATGGAGAGATAAGAAATAAAGCAAATGCCCAACCCGAAAAAACAGTT 1188 0.4175 MECNKDEALRAKQIAENRMQSGDFVGALKFATKAQRLFPEIQNITQILTVCEVHCVAQNKLSTSDMDWYGILLTDKFTEEATIKKQYKKLALLLHPDKNRSAGAEAAFKLIVEANRVLSDPTKRSLYNAKISRLVGITASQVPSHHTDRSYFGVKVDENARNYHNSFHSHSHTHNSNQQDERPTFWTSCQHCNTKYQYYKSIVNATVHCQQCSKPFKARDIGFYAPTEHTSPSFNSHKYPPNHVPPKEASKSNGRKPYGKGPEEKFVPSCPVSMAKCSAENGASCKVRKSKDGHGAAGVTKAGAGTSNGATSKAKQSQIPTNVGSKRARQPASAEFESASKRPQQDKSFKTIKVEKQEVPGNGGFNNTNPSSFTADVVGQNGEIRNKANAQPEKTV 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4230g00001 396 MobiDBLite consensus disorder prediction 361 396 - -
Trme4230g00001 396 Gene3D DnaJ domain 53 147 IPR036869 -
Trme4230g00001 396 MobiDBLite consensus disorder prediction 286 396 - -
Trme4230g00001 396 MobiDBLite consensus disorder prediction 304 328 - -
Trme4230g00001 396 MobiDBLite consensus disorder prediction 229 262 - -
Trme4230g00001 396 MobiDBLite consensus disorder prediction 340 354 - -
Trme4230g00001 396 SUPERFAMILY Chaperone J-domain 59 130 IPR036869 -
Trme4230g00001 396 Pfam DnaJ domain 67 128 IPR001623 -
Trme4230g00001 396 CDD DnaJ 67 120 IPR001623 -
Trme4230g00001 396 PRINTS DnaJ domain signature 87 102 IPR001623 -
Trme4230g00001 396 PRINTS DnaJ domain signature 103 123 IPR001623 -
Trme4230g00001 396 PRINTS DnaJ domain signature 69 87 IPR001623 -
Trme4230g00001 396 SMART dnaj_3 66 123 IPR001623 -
Trme4230g00001 396 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Trme4230g00001 396 PANTHER BNAC03G44070D PROTEIN 1 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4230g00001 Trme-Chr4230 1068 2255 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4230g00001 4 221 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.696 8.95e-29 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4230g00001 - - mtr:11432260 552.362